View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13771_low_95 (Length: 237)

Name: NF13771_low_95
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13771_low_95
NF13771_low_95
[»] chr7 (1 HSPs)
chr7 (17-222)||(49008159-49008364)
[»] chr2 (2 HSPs)
chr2 (150-222)||(21687028-21687100)
chr2 (19-108)||(21687136-21687225)
[»] chr8 (5 HSPs)
chr8 (19-120)||(8963019-8963120)
chr8 (150-222)||(8974543-8974615)
chr8 (153-222)||(8963150-8963219)
chr8 (150-222)||(8958133-8958205)
chr8 (19-108)||(8958005-8958094)
[»] chr5 (2 HSPs)
chr5 (150-214)||(19375747-19375811)
chr5 (19-108)||(19375850-19375939)
[»] chr1 (1 HSPs)
chr1 (20-72)||(34962792-34962844)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 49008159 - 49008364
Alignment:
Q  17 agttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagcttcatggcctcaaaatg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008159 agttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagcttcatggcctcaaaatg 49008258  T
Q  117 ttccagcaacagagctgcaattccagaacaatctcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008259 ttccagcaacagagctgcaattccagaacaatctcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagc 49008358  T
Q  217 actttt 222  Q
    ||||||    
T  49008359 actttt 49008364  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 21687100 - 21687028
Alignment:
Q  150 tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcactttt 222  Q
    |||| ||||||||||| ||| ||  ||||||||| |||||||||||||| ||||||||||||||||| |||||    
T  21687100 tctttaacaacttcaatttgatagatggaacatctatgtcatgtccacatgttgcaggtgtagcagcgctttt 21687028  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 21687225 - 21687136
Alignment:
Q  19 ttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagcttcatggcc 108  Q
    |||||||||||| || |||||| |||||||||||| ||| |||||||| |||||||| || || || |||  |||||||||| |||||||    
T  21687225 ttatagctcaaggggaccatcaaatagttgtccatatgtgttgaaacctgacatcactgctcctggtacatcaatcttagctgcatggcc 21687136  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 8963019 - 8963120
Alignment:
Q  19 ttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagcttcatggcctcaaaatgtt 118  Q
    |||||| || |||||||||||| | |||||||||| ||| |||||||| ||||| ||||| || || ||   |||||||||| ||||||||| |||||||    
T  8963019 ttatagttctagagggccatcaaagagttgtccatatgtgttgaaacctgacattacagctcccggtacgtcaatcttagctgcatggcctccaaatgtt 8963118  T
Q  119 cc 120  Q
    ||    
T  8963119 cc 8963120  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 8974543 - 8974615
Alignment:
Q  150 tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcactttt 222  Q
    |||||||||| ||||| || |||||||||||||| ||||||| ||| || ||||| ||||||| |||||||||    
T  8974543 tcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcactttt 8974615  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 8963150 - 8963219
Alignment:
Q  153 tcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcactttt 222  Q
    ||||||| ||||| || |||| ||||||||| ||||||||||| || ||||| ||||||| |||||||||    
T  8963150 tcaacaagttcaattttttaactggaacatctatgtcatgtcctcatgttgccggtgtaggagcactttt 8963219  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 8958133 - 8958205
Alignment:
Q  150 tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcactttt 222  Q
    |||||||||| |||||  || ||||||||||||| ||| ||||||| || ||||||||||| || ||||||||    
T  8958133 tcttcaacaagttcaatgtgataagtggaacatctatggcatgtcctcatgttgcaggtgtcgcggcactttt 8958205  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 8958005 - 8958094
Alignment:
Q  19 ttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagcttcatggcc 108  Q
    |||||| ||||||||||| ||| |||||||||||| | | |||||||| |||||||| || || || |||   ||||||||| |||||||    
T  8958005 ttatagttcaagagggccttcaaatagttgtccatatattttgaaacctgacatcactgctcctggtacaaatatcttagctgcatggcc 8958094  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 19375811 - 19375747
Alignment:
Q  150 tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagca 214  Q
    |||||||||| ||||| ||| ||||||||||||| ||| ||||||| |||||||||||| |||||    
T  19375811 tcttcaacaagttcaatttgataagtggaacatctatggcatgtcctcacgttgcaggtatagca 19375747  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 19375939 - 19375850
Alignment:
Q  19 ttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagcttcatggcc 108  Q
    |||||| ||||||||||| ||| ||| |||||||||||| |||||||| |||||||| || |  || |||  |||||||||| |||||||    
T  19375939 ttatagttcaagagggccttcaaataattgtccatttgtgttgaaacccgacatcactgctcttggtacatcaatcttagctgcatggcc 19375850  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 34962844 - 34962792
Alignment:
Q  20 tatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacat 72  Q
    ||||| ||||||||||||||| |||||||||||||||| |||||||| |||||    
T  34962844 tatagttcaagagggccatcatatagttgtccatttgtgttgaaacctgacat 34962792  T

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