View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13772_high_1 (Length: 780)

Name: NF13772_high_1
Description: NF13772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13772_high_1
NF13772_high_1
[»] chr7 (1 HSPs)
chr7 (16-761)||(23130698-23131452)


Alignment Details
Target: chr7 (Bit Score: 653; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 16 - 761
Target Start/End: Original strand, 23130698 - 23131452
Alignment:
Q  16 atactatcagagtaagaacttaatccattcgacgtgtctccaaactttccgtcattgtcgacaaagtgagaccatggccatatctcttctaccaagtgat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23130698 atactatcagagtaagaacttaatccattcgacgtgtctccaaactttccgtcattgtcgacaaagtgagaccatggccatatctcttctaccaagtgat 23130797  T
Q  116 ttgattttgtctccacataaccaatatgttttgtctcaaatgatgaggaaaccatctcattttcatttgctcttttgagggattttagctgaatttctct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23130798 ttgattttgtctccacataaccaatatgttttgtctcaaatgatgaggaaaccatctcattttcatttgctcttttgagggattttagctgaatttctct 23130897  T
Q  216 agacaatccatagtcattctgaggaaatcttgttgatgcatttatattgaaggaagtactagctgaagaagattcgtcgaagctatccatcaaataatgc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23130898 agacaatccatagtcattctgaggaaatcttgttgatgcatttatattgaaggaagtactagctgaagaagattcgtcgaagctatccatcaaataatgc 23130997  T
Q  316 gatagagttgagaatgaccaatcttgagaatcagttcccaagttcaatggtgtagaattagcttcctgacgatgaatgaaatt---------cttgatat 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||         ||||||||    
T  23130998 gatagagttgagaatgaccaatcttgagaatcagttcccaagttcaatggtgtacaattagcttccagacgatgaatgaaattaaatttctccttgatat 23131097  T
Q  407 tggtaacaaattccaggtcttcggcaacctattatatcatgtaatatgaataagcataaagaaattatttgctacaaaaaatacaattgttataacccgt 506  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23131098 tggtaataaattccaggtcttcagcaacctattatatcatgtaatatgaataagcataaagaaattattcgctacaaaaaatacaattgttataacccgt 23131197  T
Q  507 aattgcaggttggataatnnnnnnntactattaagaaaaccaattttcggacctaaacctataaggaagaaatcgaccaagttgaaggtaatatgtaagg 606  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23131198 aattgcaggttggataataaaaaaatactattaagaaaaccaattttcggacctaaacctataaggaagaaatcgaccaagttgaaggtaatatgtaagg 23131297  T
Q  607 aaaggaacaaacatgtaacagaatttataagtattttctttgatgtgtgctagcatatcgtaaaacaaacaggttgtccagctcataatcaaaatatnnn 706  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||       
T  23131298 aaaggaacaaacatgtaacagaatttataagtattttctttgatgtgtgctagcatattgtaaaacaaacaggttgtccagctcataatcaaaatatcaa 23131397  T
Q  707 nnnntatacgcaccgagttaaacgaagcaaattgcaaaactccttgtgggagaac 761  Q
        ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23131398 aaaatatacgcaccgagttaaacgaagcaaattgcaaaactccttgtggaagaac 23131452  T

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