View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13772_high_11 (Length: 312)
Name: NF13772_high_11
Description: NF13772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13772_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 305
Target Start/End: Complemental strand, 13738080 - 13737792
Alignment:
| Q |
17 |
aaaaactgaactaagtagttttcacagttcataaaaacgatccaaattgctttttctaagaagctaaaatagattaattaatagctttgtttcttctttt |
116 |
Q |
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| T |
13738080 |
aaaaactgaactaaatagttttcacagttcataaaaacgatccaaattgctttttctaagaagctaaaatagattaattaatagctttgtttcttctttc |
13737981 |
T |
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| Q |
117 |
tggaacgtcatctggtctcaaagatgcatttccataagagtatactagttggtgttaacatccatgattcttggttaactaaggctgcctctgttctaaa |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
13737980 |
tggaacgtcatctggtctcaaagatgcacttccataagagtatactagttggtgttaacatccaagattcttgattaactaaggctgcctctgttctaaa |
13737881 |
T |
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| Q |
217 |
tggtaaaatgggtagactacttttcctttacttggggacacatattgggggtaactctcgtaagttgaacttttttgagacctttgctt |
305 |
Q |
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| T |
13737880 |
tggtaaaatgggtagactacttttcctttacttggggacacatattgggggtgactctcgtaagttgaacttttttgagacctttgctt |
13737792 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 23479543 - 23479626
Alignment:
| Q |
171 |
ttaacatccatgattcttggttaactaaggctgcctctgttctaaatggtaaaatgggtagactacttttcctttacttgggga |
254 |
Q |
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| T |
23479543 |
ttaatatccatgattcttggttgacttaggcatcctctgttcttctttgtaaaatgggtcgtttacctttcctttacttgggga |
23479626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 246
Target Start/End: Original strand, 48639141 - 48639261
Alignment:
| Q |
125 |
catctggtctcaaagatgcatttccataagagtatactagttggtgttaacatccatgattcttggttaactaaggctgcctctgttctaaatggtaaaa |
224 |
Q |
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||||||||||||||| || | ||||| || || || ||||||||||||| || |||||||||||||| || |||| ||||||||||| || ||||| |
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| T |
48639141 |
catctggtctcaaag-tgaacttccacaaaagcatgttagttggtgttaatattcatgattcttggttggctgaggcagcctctgttcttcattgtaaat |
48639239 |
T |
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| Q |
225 |
tgggtagactacttttccttta |
246 |
Q |
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|||| ||| | | ||||||||| |
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| T |
48639240 |
tgggcagagttcctttccttta |
48639261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 26370623 - 26370536
Alignment:
| Q |
125 |
catctggtctcaaagatgcatttccataagagtatactagttggtgttaacatccatgattcttggttaactaaggctgcctctgttct |
213 |
Q |
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||||||||||||| | || | ||||| || ||||| ||||||||||||| || |||||||||||||| || |||| ||||||||||| |
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| T |
26370623 |
catctggtctcaagg-tgaacttccacaaaagtatgttagttggtgttaatattcatgattcttggttggctgaggcagcctctgttct |
26370536 |
T |
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