View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13772_high_13 (Length: 310)
Name: NF13772_high_13
Description: NF13772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13772_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 9e-70; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 156 - 289
Target Start/End: Original strand, 2096411 - 2096544
Alignment:
| Q |
156 |
ctgttttactttcttgtccagatgcatcgttgtggtattgcaatcgcacagaggaataatccagtaagttggtttgttctatatgttttgtgtttgtata |
255 |
Q |
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| T |
2096411 |
ctgttttactttcttgtccagatgcatcgttgtggtattgcaatcgcacagaggaataatccagtaagttggtttgttctatatgttttgtgtttgtata |
2096510 |
T |
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| Q |
256 |
aattgttgaaaaatcttggataacatagcttcaa |
289 |
Q |
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| T |
2096511 |
aattgttgaaaaatcttggataacatagcttcaa |
2096544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 152 - 293
Target Start/End: Original strand, 2105461 - 2105604
Alignment:
| Q |
152 |
atctctgttttactttcttgtccagatgcatcgttgtggtattgcaatcgcacagagga---ataatccagtaagttggtttgttctatatgttttgtgt |
248 |
Q |
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| T |
2105461 |
atctctgttttacttacttttccagatgcatggttgtggtattgcaatcgtagagaggaattataatccagtaagtcggtttattttatat-ttttttgt |
2105559 |
T |
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| Q |
249 |
ttgtataaattgttgaaaaatcttggataacatagcttcaaaaat |
293 |
Q |
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| T |
2105560 |
ttctataaattgttgaaaaatcttggatagcatagcatgaaaaat |
2105604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 2105327 - 2105386
Alignment:
| Q |
80 |
tttaaacctagataaaagagaaaaaattaattcaacaactaaactactaatatttgtcatt |
140 |
Q |
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| T |
2105327 |
tttaaacctagatgaaagaaaaaaaattaattcaaaaact-agctaataatatttgtcatt |
2105386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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