View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13772_high_16 (Length: 297)
Name: NF13772_high_16
Description: NF13772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13772_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 43781432 - 43781160
Alignment:
| Q |
18 |
agagaatccattcatgagagagtagtgaaatatgaacagttgaatacaaaggagatattaaagatgagcaaaaattgttgaagcgtgagattgcaaacat |
117 |
Q |
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| T |
43781432 |
agagaatccattcatgagagagtagtgaaatatgaacagttgaatacaaaggagatattaaagatgagcaaaaattgttgaagcgtgagattgcaaacat |
43781333 |
T |
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| Q |
118 |
gagagnnnnnnntggagaga----atccattcctatatatcataaagaaaatgcaaatgagatgtatataaaagttttgaggtaaaatatgctatcaatg |
213 |
Q |
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| T |
43781332 |
gagagagaaaaatggagagaatccatccattcctatatatcataaagaaaatgcaaatgagttgtatataaaagttttgaggcaaaatatgctatcaatg |
43781233 |
T |
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| Q |
214 |
caaaaagaaagaaaataaacaccatggtactagataacaatccggaatccacttcagaaaccatcgatgatgt |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
43781232 |
caaaaagaaagaaaataaacaccatggtactagataacaatccagaatccacttcagaaaccatctatgatgt |
43781160 |
T |
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