View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13772_high_17 (Length: 296)
Name: NF13772_high_17
Description: NF13772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13772_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 40086502 - 40086314
Alignment:
| Q |
1 |
tgttgagagatggaggaagaggaagaaacaaagaaacaaacaaatgcgttcttctgtggcagaggccattgctgattttggaaggatgggaattgggaac |
100 |
Q |
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| T |
40086502 |
tgttgagagatggaggaagaggaagaaacaaagaaacaaacaaatgcgttcttctgtggcagaggccattgctgattttggaaggatgggaattgggaag |
40086403 |
T |
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| Q |
101 |
gataagaagatatcattcggtaagaaaatttacaagatannnnnnnnnnnnnaggaattttcaatcaatacaatataatgtttcttatttttt |
193 |
Q |
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| T |
40086402 |
gat---aagatatcatacggtaagaaaatttacaaaata-ttttttttttttaggaattttcaatcaatacaatataatgttttttttttttt |
40086314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 40080508 - 40080426
Alignment:
| Q |
1 |
tgttgagagatggaggaagaggaagaaacaaagaaacaaacaaatgcgttcttctgtggcagaggccattgctgattttggaa |
83 |
Q |
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| T |
40080508 |
tgttgaaagattgaggaaaaggaaaagacacagacaaaaacaaatacgttcttctgtggcagaggccattgctgatttcggaa |
40080426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 40086312 - 40086273
Alignment:
| Q |
236 |
acaaagatattaggaaaatgttaatgagtattttgttaag |
275 |
Q |
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| T |
40086312 |
acaaagatattaggaaaatattaatgagtattttgttaag |
40086273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 40074389 - 40074350
Alignment:
| Q |
34 |
aaacaaacaaatgcgttcttctgtggcagaggccattgct |
73 |
Q |
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| T |
40074389 |
aaacaaaccaatgcgttcttctgtggctgaggccattgct |
40074350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 73
Target Start/End: Original strand, 47392967 - 47393006
Alignment:
| Q |
34 |
aaacaaacaaatgcgttcttctgtggcagaggccattgct |
73 |
Q |
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| T |
47392967 |
aaacaaaccaatgcgttcttctgtggctgaggccattgct |
47393006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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