View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13772_high_20 (Length: 242)
Name: NF13772_high_20
Description: NF13772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13772_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 28926121 - 28926347
Alignment:
| Q |
1 |
ttgctcacatcagaatcaccagtatcatcttccccctcacctatttcatatggatccaagtcacgcttgtctttcccatttttaacgatgccacgggcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
28926121 |
ttgctcacatcagaatcaccagtatcatcttccccctcacctatttcatacggatccaagtcacgcttgtttttcccatttttaacgatgtcacgggcaa |
28926220 |
T |
|
| Q |
101 |
tgtaaatatcctgagaattcagcccttctctttctttgataacttgataatattctaaaaagtaactttcaactgtatctggatctctcatatctatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28926221 |
tgtaaatatcctgagaattcagcccttctctttctttgataacttgataatattctaaaaagtaactttcaactgtatctggatctctcatatctatctt |
28926320 |
T |
|
| Q |
201 |
ctcctgcaaatgaaaaagcacataatt |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
28926321 |
ctcctgcaaatgaaaaagcacataatt |
28926347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 28916912 - 28917101
Alignment:
| Q |
27 |
atcttccccctcacctatttcatatggatccaagtcacgcttgtctttcccatttttaacgatgccacgggcaatgtaaatatcctgagaattcagccct |
126 |
Q |
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|||||||||||||||| ||||||| || ||||||||||||||| || |||||||||| |||| |||||||||| |||| ||||||||||||| |||| |
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| T |
28916912 |
atcttccccctcacctctttcatacggttccaagtcacgcttgatgtttccatttttaatgatgtcacgggcaatataaacatcctgagaattccaccct |
28917011 |
T |
|
| Q |
127 |
tctctttctttgataacttgataatattctaaaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaa |
216 |
Q |
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| T |
28917012 |
tccttttttttgataacttgataatattctaaaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaa |
28917101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 67 - 226
Target Start/End: Original strand, 28902537 - 28902696
Alignment:
| Q |
67 |
ttgtctttcccatttttaacgatgccacgggcaatgtaaatatcctgagaattcagcccttctctttctttgataacttgataatattctaaaaagtaac |
166 |
Q |
| |
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|||| ||| |||||||||| |||| |||||||| | |||| |||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||| |
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| T |
28902537 |
ttgttttttccatttttaatgatgtcacgggcagtataaacatcctgagaattcagcccttcttttttcttgataacttgataatattcaaaaaagtaac |
28902636 |
T |
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| Q |
167 |
tttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaaagcacataat |
226 |
Q |
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|||| | ||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
28902637 |
tttctattgtatctggatctctcatatctaccttctcctgcaaatgaaaaaatacataat |
28902696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 28892538 - 28892751
Alignment:
| Q |
7 |
acatcagaatcaccagtatcatcttccccctcacctatttcatatggatccaagtcacgcttgtctttcccatttttaacgatgccacgggcaatgtaaa |
106 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||| ||| | |||| ||| | ||||||||| |||| |
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| T |
28892538 |
acatcagactcaccggtatcatcttccccctcacctatttcatatggatc------acacttgttttttctatttataatagtatcacgggcaaaataaa |
28892631 |
T |
|
| Q |
107 |
tatcctgagaattcagcccttctctttctttgataacttgataatattctaaaaagtaactttcaactgtatctggatctctcatatctatcttctcctg |
206 |
Q |
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| ||||||||||||||||||| ||| ||||||| ||||||||| || |||||||||||||| ||||||||||||| ||||||| | ||| ||||| |
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| T |
28892632 |
cttgctgagaattcagcccttcttttttcttgataatttgataataatcaaaaaagtaactttcttgtgtatctggatctttcatatcgaccttttcctg |
28892731 |
T |
|
| Q |
207 |
caaatgaaaaagcacataat |
226 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
28892732 |
caaatgaaaaagcacataat |
28892751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 28935823 - 28935885
Alignment:
| Q |
158 |
aaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaaagca |
220 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||| |
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| T |
28935823 |
aaaagtaactttcaaatgtatctggatctttcatatctatcttttcctgaaaatgaaaaagca |
28935885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 28902493 - 28902536
Alignment:
| Q |
8 |
catcagaatcaccagtatcatcttccccctcacctatttcatat |
51 |
Q |
| |
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||||||| ||||||||||| |||||||||||||||| ||||||| |
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| T |
28902493 |
catcagattcaccagtatcgtcttccccctcacctacttcatat |
28902536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 34009522 - 34009631
Alignment:
| Q |
4 |
ctcacatcagaatcaccagtatcatcttccccctcacctatttcatatggatccaagtcacgcttgtctttcccatttttaacgatgccacgggcaatgt |
103 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| | ||| |||| |||| |||||||||| | |
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| T |
34009522 |
ctcacatcagattcaccagtatcatcttccccctcacctacttcatatggatccaagtcacacttgttttttcaattgttaatgatgtcacgggcaatat |
34009621 |
T |
|
| Q |
104 |
aaatatcctg |
113 |
Q |
| |
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||| |||||| |
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| T |
34009622 |
aaacatcctg |
34009631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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