View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13772_low_10 (Length: 361)
Name: NF13772_low_10
Description: NF13772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13772_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 33818215 - 33817881
Alignment:
| Q |
19 |
aactgtcacattcaagttgttactgttctcctctcacctcaaaatcactctacataatcattaccattaaagtcgttttcatatattgactgcactcatg |
118 |
Q |
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| T |
33818215 |
aactgtcacattcaagttgttactgttctcctctcacctcaaaatcactctacatcatcatgaccgttaaagtcgttttcatatattgactgcactcatg |
33818116 |
T |
|
| Q |
119 |
acaaacatcttgttccctagcatttcccatagggccattgcctactggaacattctcatttctcaatactcccaaaattagcattaacttccgctagctg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33818115 |
acaaacatcttgttccctagcatttcccatagggccattgcctactggaacattctcatttctcaatacttccaaaattagcattaacttccgctagctg |
33818016 |
T |
|
| Q |
219 |
tgactatatttaaaagttcttaatctattgttcgtcaccccc---accattatgctctgaaaaaattctcatattccagcattccataatgcattatcat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33818015 |
tgactatatttaaaagttcttaatctattgttcgtcacccccaccaccattatgctctgaaaaaattctcatattccagcattccataatgcattatcat |
33817916 |
T |
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| Q |
316 |
gaatagtttcttactgtatgaattgtatggcctat |
350 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
33817915 |
gaatagtttcttactgtatgaattgtatggcctat |
33817881 |
T |
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