View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13772_low_13 (Length: 311)
Name: NF13772_low_13
Description: NF13772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13772_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 7e-83; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 145 - 304
Target Start/End: Complemental strand, 28925999 - 28925840
Alignment:
| Q |
145 |
gattttgtaggatggggttcaagaagtctcatagattttcttaaaaatattggtagagacacgaccaaagctttttccgaaattgaagttgcttcgatcg |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28925999 |
gattttgtaggatggggttcaagaagtctcatagattttcttaaaaatattggtagagacacgaccaaagctttttccgaaattgaagttgcttcgatcg |
28925900 |
T |
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| Q |
245 |
tcaatgattactgccacaaaaaccagctttttgaccccaagaaaaagaagataatctgtg |
304 |
Q |
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| T |
28925899 |
tcaatgattactgccacaaacaccagctttttgaccccaagaaaaagaagataatctgtg |
28925840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 145 - 296
Target Start/End: Complemental strand, 28916773 - 28916622
Alignment:
| Q |
145 |
gattttgtaggatggggttcaagaagtctcatagattttcttaaaaatattggtagagacacgaccaaagctttttccgaaattgaagttgcttcgatcg |
244 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28916773 |
gattttgttggatggggttcaagaagtctcatagattttcttaaaaatattggtgaagacacgaccaaagctttttccgaaattgatgttgcttcgatca |
28916674 |
T |
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| Q |
245 |
tcaatgattactgccacaaaaaccagctttttgaccccaagaaaaagaagat |
296 |
Q |
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| T |
28916673 |
tccataagtactgccaaaaaaaccagctttttgaccccaagaaaaagaagat |
28916622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 145 - 295
Target Start/End: Complemental strand, 28892407 - 28892257
Alignment:
| Q |
145 |
gattttgtaggatggggttcaagaagtctcatagattttcttaaaaatattggtagagacacgaccaaagctttttccgaaattgaagttgcttcgatcg |
244 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
28892407 |
gattttgttggatggggttcaagaagtctcgtagattttcttaaaaatattggtgaagacacgaccaaagctttttccgaaattgatgttgcttcaatca |
28892308 |
T |
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| Q |
245 |
tcaatgattactgccacaaaaaccagctttttgaccccaagaaaaagaaga |
295 |
Q |
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||| | | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28892307 |
tcagtaagtactgccacaaaaaccagctttttgaccccaagaaaaagaaga |
28892257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 145 - 296
Target Start/End: Complemental strand, 28902361 - 28902210
Alignment:
| Q |
145 |
gattttgtaggatggggttcaagaagtctcatagattttcttaaaaatattggtagagacacgaccaaagctttttccgaaattgaagttgcttcgatcg |
244 |
Q |
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| T |
28902361 |
gattttgttggatggggttcaagaagtctcatagattttcttaaaagtattggtagagacacgactgaagcgttgtctgaacttgatgttgcttggatca |
28902262 |
T |
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| Q |
245 |
tcaatgattactgccacaaaaaccagctttttgaccccaagaaaaagaagat |
296 |
Q |
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||| | |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28902261 |
tcatccagtactgccacacaaaccagctttttgaccccaagaaaaagaagat |
28902210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 28926143 - 28926067
Alignment:
| Q |
1 |
actggtgattctgatgtgagcaactttataggatctgattgtgacgacttcgatgacacgtcaagagttaaatcagt |
77 |
Q |
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| T |
28926143 |
actggtgattctgatgtgagcaactttataggatctgattgtgacgacttcgatgaaacgtcaagagttaaatcagt |
28926067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 148 - 292
Target Start/End: Complemental strand, 28935601 - 28935457
Alignment:
| Q |
148 |
tttgtaggatggggttcaagaagtctcatagattttcttaaaaatattggtagagacacgaccaaagctttttccgaaattgaagttgcttcgatcgtca |
247 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| ||| | ||| ||| ||||||||||| ||| |
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| T |
28935601 |
tttgttggatggggttcaagaagtctcatagattttcttaaagatattggtagagacacggcaaaagcatttacggaacatgatgttgcttcgataatca |
28935502 |
T |
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| Q |
248 |
atgattactgccacaaaaaccagctttttgaccccaagaaaaaga |
292 |
Q |
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| T |
28935501 |
tagattattgcaataaaaacaacctttttgactcttagaaaaaga |
28935457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 28902508 - 28902435
Alignment:
| Q |
1 |
actggtgattctgatgtgagcaactttataggatctgattgtgacgacttcgatgacacgtcaagagttaaatc |
74 |
Q |
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| T |
28902508 |
actggtgaatctgatgcgagtgactttataggttctgattgtgatgacttggttggcacgtcaagagttaaatc |
28902435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 28935738 - 28935681
Alignment:
| Q |
2 |
ctggtgattctgatgtgagcaactttataggatctgattgtgacgacttcgatgacac |
59 |
Q |
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||||||| ||||||||||| |||||||||| ||||||||||||||| | |||||||| |
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| T |
28935738 |
ctggtgactctgatgtgagttactttataggttctgattgtgacgacctagatgacac |
28935681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 28916889 - 28916835
Alignment:
| Q |
23 |
actttataggatctgattgtgacgacttcgatgacacgtcaagagttaaatcagt |
77 |
Q |
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|||||||||| ||||||| ||||||||| | || |||||||||||||||| |||| |
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| T |
28916889 |
actttataggttctgattctgacgacttggttggcacgtcaagagttaaaccagt |
28916835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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