View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13772_low_19 (Length: 253)

Name: NF13772_low_19
Description: NF13772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13772_low_19
NF13772_low_19
[»] chr8 (2 HSPs)
chr8 (79-180)||(22519953-22520054)
chr8 (215-244)||(22520088-22520117)
[»] chr1 (3 HSPs)
chr1 (109-180)||(48622263-48622334)
chr1 (108-180)||(31565175-31565247)
chr1 (109-165)||(40153242-40153298)
[»] chr4 (1 HSPs)
chr4 (111-167)||(46563472-46563528)
[»] chr2 (1 HSPs)
chr2 (102-165)||(16550227-16550290)


Alignment Details
Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 22519953 - 22520054
Alignment:
Q  79 cattaacagcacatgatgtgtcattagggtacatgttaaggtaccaaagatataaaatttgcatcggaaaatgtgtcaatttatttcataaaagattgaa 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22519953 cattaacagcacatgatgtgtcattagggtacatgttaaggtaccaaagatataaaatttgcatcggaaaatgtgtcaatttatttcataaaagattgaa 22520052  T
Q  179 at 180  Q
    ||    
T  22520053 at 22520054  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 244
Target Start/End: Original strand, 22520088 - 22520117
Alignment:
Q  215 aaagaaacctatatttttataatgttcatc 244  Q
    ||||||||||||||||||||||||||||||    
T  22520088 aaagaaacctatatttttataatgttcatc 22520117  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 180
Target Start/End: Complemental strand, 48622334 - 48622263
Alignment:
Q  109 acatgttaaggtaccaaagatataaaatttgcatcggaaaatgtgtcaatttatttcataaaagattgaaat 180  Q
    |||||||||||||| ||||||| ||| |||  |||||||||||||||||||||||| | |||||||||||||    
T  48622334 acatgttaaggtactaaagatagaaattttatatcggaaaatgtgtcaatttattttacaaaagattgaaat 48622263  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 31565175 - 31565247
Alignment:
Q  108 tacatgttaaggtaccaaagatataaaatttgcatcggaaaatgtgtcaatttatttcataaaagattgaaat 180  Q
    ||||||||||| ||||||||||||||  |||||||  |||| ||   |||||||||||  |||||||||||||    
T  31565175 tacatgttaagataccaaagatataatttttgcattagaaattgcaccaatttatttctgaaaagattgaaat 31565247  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 40153242 - 40153298
Alignment:
Q  109 acatgttaaggtaccaaagatataaaatttgcatcggaaaatgtgtcaatttatttc 165  Q
    |||||||||||| |||| |||||||| | ||||||| ||| |||| |||||||||||    
T  40153242 acatgttaaggttccaacgatataaattatgcatcgtaaattgtgccaatttatttc 40153298  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 46563472 - 46563528
Alignment:
Q  111 atgttaaggtaccaaagatataaaatttgcatcggaaaatgtgtcaatttatttcat 167  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||  | ||||||||||    
T  46563472 atgttaatgtatcaaagatataaattttgcatcggaaaatgtgctagtttatttcat 46563528  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 16550227 - 16550290
Alignment:
Q  102 ttagggtacatgttaaggtaccaaagatataaaatttgcatcggaaaatgtgtcaatttatttc 165  Q
    |||||| |||||||||||| ||||||||| ||| | ||||| | ||| ||||||||||||||||    
T  16550227 ttagggcacatgttaaggttccaaagatagaaattatgcattgtaaattgtgtcaatttatttc 16550290  T

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