View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13772_low_2 (Length: 779)
Name: NF13772_low_2
Description: NF13772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13772_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 13017023 - 13017329
Alignment:
| Q |
1 |
tgtatgagattcaattcaataaaataagggtaaaaaatggtttgtatgagattcaatttaatcaattttaaatttgcaaagaggcaccatggaaagagag |
100 |
Q |
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| T |
13017023 |
tgtatgagattcaattcaataaaataagggtaaaaaatggtttgtatgagattcaatttaatcaattttaaatttgcaaagaggcaccatgaaaagagag |
13017122 |
T |
|
| Q |
101 |
acgatggtgagcaatggttgaaaggaagtaacatgctatgattgtagaaattgagaagaaacgatgtgtttccttcttcttcttctttattgaaaaatca |
200 |
Q |
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| T |
13017123 |
acgatggcgagcaatggttgaaaggaagtaacatgctatgattgtagaaattgagaagaaacaatgtgtttccttcttcttcttctttattgaaaaatca |
13017222 |
T |
|
| Q |
201 |
ttccataattattaaggnnnnnnngtacgtagatgtaagttgaaggtttatgagaattacataatatcaggtaagaatatgtaggggtgaatccatggct |
300 |
Q |
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| T |
13017223 |
ttccataattattaaggtttttttgtacgtagatgtaagttgaaggtttctgagaattacataatatcaggtaagaatatgtaggggtgaatccatggct |
13017322 |
T |
|
| Q |
301 |
aattagg |
307 |
Q |
| |
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||||||| |
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| T |
13017323 |
aattagg |
13017329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 13088401 - 13088707
Alignment:
| Q |
1 |
tgtatgagattcaattcaataaaataagggtaaaaaatggtttgtatgagattcaatttaatcaattttaaatttgcaaagaggcaccatggaaagagag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13088401 |
tgtatgagattcaattcaataaaataagggtaaaaaatggtttgtatgagattcaatttaatcaattttaaatttgcaaagaggcaccatgaaaagagag |
13088500 |
T |
|
| Q |
101 |
acgatggtgagcaatggttgaaaggaagtaacatgctatgattgtagaaattgagaagaaacgatgtgtttccttcttcttcttctttattgaaaaatca |
200 |
Q |
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| T |
13088501 |
acgatggcgagcaatggttgaaaggaagtaacatgctatgattgtagaaattgagaagaaacaatgtgtttccttcttcttcttctttattgaaaaatca |
13088600 |
T |
|
| Q |
201 |
ttccataattattaaggnnnnnnngtacgtagatgtaagttgaaggtttatgagaattacataatatcaggtaagaatatgtaggggtgaatccatggct |
300 |
Q |
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| T |
13088601 |
ttccataattattaaggtttttttgtacgtagatgtaagttgaaggtttctgagaattacataatatcaggtaagaatatgtaggggtgaatccatggct |
13088700 |
T |
|
| Q |
301 |
aattagg |
307 |
Q |
| |
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||||||| |
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| T |
13088701 |
aattagg |
13088707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 368 - 719
Target Start/End: Original strand, 13088768 - 13089128
Alignment:
| Q |
368 |
agtattttgtaggggtgaaggtataaatgtatgggtatagggtacaattttctgtatcaaaacatacaaagcattgggctttgatagcatatatcatagt |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13088768 |
agtattttgtaggggtgaaggtataaatgtatgggtatagggtacaatttcctttatcaaaacatacaaagcattgggctttgatagcatatatcacagc |
13088867 |
T |
|
| Q |
468 |
ttgggccttacaaatggnnnnnnnnntgaaaattgcttttcaacacctcgattttctttttgatcggatcgtaactttcgatcagctatttttatgtgtt |
567 |
Q |
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| T |
13088868 |
ttgggccttacaaatggaaaaaaaaatgaaaattgcttttcaacacctcgattttctttttgatcggatcgtaactttcgatcagctatttttatgtgtt |
13088967 |
T |
|
| Q |
568 |
aaaagccgatcgagtgtaactttggcaatgtattttcagaaaagtgaacaattttaaggtgcttaaaaagcaattgt---------attttctaagccca |
658 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
13088968 |
aaaagccgatcgagtgtaactttggcaatgtattttcagcaaagcgaacaattttaaggtgcctaaaaagcaattgtcaaaaaatatttttctaagccca |
13089067 |
T |
|
| Q |
659 |
tcatgagtatgtatggtaacgacaagttgggcatccacttgttttctttttctgaaggatt |
719 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13089068 |
gcatgagtatgtatggtaacgacaagttgggcatccacttgttttctttttctgaaggatt |
13089128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 368 - 719
Target Start/End: Original strand, 13017390 - 13017740
Alignment:
| Q |
368 |
agtattttgtaggggtgaaggtataaatgtatgggtatagggtacaattttctgtatcaaaacatacaaagcattgggctttgatagcatatatcatagt |
467 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13017390 |
agtattttgtaggggttaaggtataaatgtatgggtatagggtacaatttcctttatcaaaacatacaaagcattgggctttgatagcatatatcacagc |
13017489 |
T |
|
| Q |
468 |
ttgggccttacaaatggnnnnnnnnntgaaaattgcttttcaacacctcgattttctttttgatcggatcgtaactttcgatcagctatttttatgtgtt |
567 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13017490 |
ttgggccttacaaatggaaaaaaaaatgaaaattgcttttcaacaccttgattttctttttgatcggatcgtaactttcgatcagctatttttatgtgtt |
13017589 |
T |
|
| Q |
568 |
aaaagccgatcgagtgtaactttggcaatgtattttcagaaaagtgaacaattttaaggtgcttaaaaagcaattgt---------attttctaagccca |
658 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||| |||||||| |||| |
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| T |
13017590 |
aaaagccgatcgagtgtaactttggcaatgtattttcagcaaag----------caaggtgcctaaaaagcaattgtcgaaaaatatttttctaatccca |
13017679 |
T |
|
| Q |
659 |
tcatgagtatgtatggtaacgacaagttgggcatccacttgttttctttttctgaaggatt |
719 |
Q |
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| T |
13017680 |
gcatgagtatgtatggtaacgacaagttgggcatccacttgttttctttttctgaaggatt |
13017740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 721 - 761
Target Start/End: Original strand, 13017796 - 13017836
Alignment:
| Q |
721 |
agaaagatcttacattaaaaaatgtttatgaaaacacaagc |
761 |
Q |
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| T |
13017796 |
agaaagatcttacattaaaaaatgtttatgaaaacacaagc |
13017836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 721 - 759
Target Start/End: Original strand, 13089184 - 13089222
Alignment:
| Q |
721 |
agaaagatcttacattaaaaaatgtttatgaaaacacaa |
759 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13089184 |
agaaagatcttacattaaaaaatgtttatgaaaacacaa |
13089222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 38 - 307
Target Start/End: Original strand, 14761115 - 14761395
Alignment:
| Q |
38 |
tggtttgtatgagattcaatttaatcaattttaaatttgcaaag-aggcaccatggaaagagagacgatggtgagcaatggttgaaaggaagtaacatgc |
136 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||| |||||| | ||||||||||||| | |||| |
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| T |
14761115 |
tggtctgtatgagattcaatttaatcaattttaaatttaaaaaggaggcaccacaagaagagggacgacggtgag-agcggttgaaaggaagcagtatgc |
14761213 |
T |
|
| Q |
137 |
tatgattgtagaaattgagaagaaacgatgtgtttccttcttctt------------cttcttt-attgaaaaatcattccataattattaaggnnnnnn |
223 |
Q |
| |
|
|||| ||||||||| || |||| |||||||||||||||| || || ||||||| |||||||||||| |||||||||||||||| |
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| T |
14761214 |
tatgtttgtagaaaatgggaagcaacgatgtgtttcctttttttttttttttttttccttcttttattgaaaaatcaatccataattattaaggttttct |
14761313 |
T |
|
| Q |
224 |
ngtacgtagatgtaagttgaaggtttatgagaattacataatatcaggtaagaatatgtaggggtgaatccatggctaattagg |
307 |
Q |
| |
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||||||| |||||||||||| |||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||||||| |
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| T |
14761314 |
ggtacgtaaatgtaagttgaaagtttctgggaataacataataccatgtaaga--atgtaggggtgaacccatggctaattagg |
14761395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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