View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13772_low_20 (Length: 249)
Name: NF13772_low_20
Description: NF13772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13772_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 37764930 - 37764693
Alignment:
| Q |
1 |
atgatacttcagttgcatccaatgatggtagcaaccaagcaacattgaatagggaaaccaaaagtacatcagttgcaaaccatcctatcttaagcgaccc |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| | | || |||| ||||||||||||||||||||||||||||||||| | |
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| T |
37764930 |
atgaaacttcagttgcatccaatgatggtagcaaccaagcaacattgaataagaagactgaaagaacatcagttgcaaaccatcctatcttaagcgactc |
37764831 |
T |
|
| Q |
101 |
acaagtagatgaattaccaaataaccctaaatccaataagaaacatgagcttaagcgtgatggagtaatccctgatatggattatttcaagagtaaagcg |
200 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37764830 |
acaattagatgagttaccaaataaccctaaatccaataagaaacgtgagcttaagcctgatggagtaatccctgatatggattatttcaagagtaaagtg |
37764731 |
T |
|
| Q |
201 |
acaacggagtggtctgattctgaaagcagtgatgatga |
238 |
Q |
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| T |
37764730 |
acaacggagtggtctgattctgaaagcagtgatgatga |
37764693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 38601386 - 38601623
Alignment:
| Q |
1 |
atgatacttcagttgcatccaatgatggtagcaaccaagcaacattgaatagggaaaccaaaagtacatcagttgcaaaccatcctatcttaagcgaccc |
100 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||| | |
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| T |
38601386 |
atgatacttcagttgtatccaatgatggtaacaaccaagcaacattgaataaggagaccgaaaggacatcagttgcaaaccatcctatcttaagcgactc |
38601485 |
T |
|
| Q |
101 |
acaagtagatgaattaccaaataaccctaaatccaataagaaacatgagcttaagcgtgatggagtaatccctgatatggattatttcaagagtaaagcg |
200 |
Q |
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||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| ||| |
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| T |
38601486 |
acaagtagatgaattaccaaaaaaccctaaatccgataagaaacgtgagcttaagcatgatggagtaatctctgatatggattatttcaagagcaaatta |
38601585 |
T |
|
| Q |
201 |
acaacggagtggtctgattctgaaagcagtgatgatga |
238 |
Q |
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| T |
38601586 |
acaacggagtggtctgattctgaaagcagtgatgatga |
38601623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 37743735 - 37743498
Alignment:
| Q |
1 |
atgatacttcagttgcatccaatgatggtagcaaccaagcaacattgaatagggaaaccaaaagtacatcagttgcaaaccatcctatcttaagcgaccc |
100 |
Q |
| |
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||||||||||||||| |||||||||||||| ||||||| ||||| |||||| ||| ||| ||||||||| | |||||||||||||||||||||||||| | |
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| T |
37743735 |
atgatacttcagttgtatccaatgatggtaacaaccaaccaacactgaataaggagaccgaaagtacattaattgcaaaccatcctatcttaagcgactc |
37743636 |
T |
|
| Q |
101 |
acaagtagatgaattaccaaataaccctaaatccaataagaaacatgagcttaagcgtgatggagtaatccctgatatggattatttcaagagtaaagcg |
200 |
Q |
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||| |||||||| ||||||||||||||||||||| | ||| | ||| |||||| |||||||||||| ||||||||||||||||||||||||||| | |
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| T |
37743635 |
acatgtagatgagttaccaaataaccctaaatccgacaagtcgcgtgatattaagcatgatggagtaatttctgatatggattatttcaagagtaaagtg |
37743536 |
T |
|
| Q |
201 |
acaacggagtggtctgattctgaaagcagtgatgatga |
238 |
Q |
| |
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| T |
37743535 |
acaacggagtggtctgattctgaaagcagtgatgatga |
37743498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 5812156 - 5811929
Alignment:
| Q |
10 |
cagttgcatccaatgatggtagcaaccaagcaacattgaatagggaaaccaaaagtacatcagttgcaaaccatcctatcttaagcgacccacaagtaga |
109 |
Q |
| |
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|||||| |||||||||||||| |||||||||||||||||||| ||| ||||| |||||||| |||||||| ||||||||||||| ||| |||||||| |
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| T |
5812156 |
cagttgtatccaatgatggtaacaaccaagcaacattgaataaggagaccaacggtacatcaattgcaaactatcctatcttaagtgacagacaagtagt |
5812057 |
T |
|
| Q |
110 |
tgaattaccaaataaccctaaatccaataagaaacatgagcttaagcgtgatggagtaatccctgatatggattatttcaagagtaaagcgacaacggag |
209 |
Q |
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|| |||||||||||| || |||| | ||| || ||||||||| | ||||||||| || ||||||| ||||||||||||| ||||| |||||| || |
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| T |
5812056 |
tggattaccaaataatcccgaatctgacaagtcacgtgagcttaatcatgatggagtgatgtctgatattgattatttcaagaataaagtgacaacagat |
5811957 |
T |
|
| Q |
210 |
tggtctgattctgaaagcagtgatgatg |
237 |
Q |
| |
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||||| |||||||||||||||||||||| |
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| T |
5811956 |
tggtccgattctgaaagcagtgatgatg |
5811929 |
T |
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