View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13772_low_3 (Length: 712)
Name: NF13772_low_3
Description: NF13772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13772_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 584; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 1 - 699
Target Start/End: Original strand, 20992743 - 20993440
Alignment:
| Q |
1 |
aatgaatcttgtagagaattatgttacctacacgtacacgactctcacaaatgtaccagaagctacatattaacacaagtctcataagtaaaattcaagt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
20992743 |
aatgaatcttgtagagaattatgttacctacatgtacacgactctcacaaatgtaccagaagctacattttaacacaagtctcataagtaaaattcaagt |
20992842 |
T |
|
| Q |
101 |
gggagcaggcaacttgaactcagactaagcaccagtaaagtggtgcaatttgtgagtaacagagttgtatagataaacaatatacgcaaaaaattgtatg |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
20992843 |
gggagcaggcaacttgaactcagactaagcaccagtaaagtggcgcaatttgtgagtaacagagttgtatagataa-caatatacgcaaaaaatcgtatg |
20992941 |
T |
|
| Q |
201 |
atcaacaatatatcgtagaatattataagttagtttgtataattatttcaacaagcaattagtnnnnnnnnnnnnnnnnntgagataatcgtactaatga |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20992942 |
atcaacaatatatcgtagaatattataagttagtttgtataattatttcaacaagcaattagtaaaaaagaaaaacaaaatgagataatcgtactaatga |
20993041 |
T |
|
| Q |
301 |
ttgaaatttttatataacttcaccaaaaaattaaaatgaatatatgcgccttaaatatttcataagttcccttcattagtccgtccatgaatatcaataa |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20993042 |
ttgaaatttttatataacttcaccaaaaaattaaaatgaatatatgtgccttaaatatttcataagttcccttcattagtccgtccatgaatatcaataa |
20993141 |
T |
|
| Q |
401 |
atgtactggtcnnnnnnnngttagtcggaattatggaaaaactattacttatcttagttgagaagttcctgtaaactagataaatcaaaatggtcttcta |
500 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20993142 |
atgtactggtcttttttttgttagtcggaattatggaaaaactattacttatctcagttgagaagttcctgtaaactagataaatcaaaatggtcttcta |
20993241 |
T |
|
| Q |
501 |
tgggactcaggatccccaaaggtttttattacatgttagcagctaagacttatctcagaatgtgaacctcctataacctaaagttaattcaaataggtac |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20993242 |
tgggactcaggatccccaaaggtttttattacatgttagcagctaagaattacctcagaatgtgaacctcctataacctaaagttaattcaaataggtac |
20993341 |
T |
|
| Q |
601 |
tacaagtacaagtgactaattaagtgacgcaaagagacacactttcagagtatcagcaagcaatataatccttactatagagcattcacttaagtagaa |
699 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20993342 |
tacaagtacaagtgactaattaagtgacgcaaagagacacactttcagagtatcagcaagcaatataatccttactatagagcattcacttaagtagaa |
20993440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 35 - 378
Target Start/End: Complemental strand, 20978702 - 20978366
Alignment:
| Q |
35 |
tacacgactctcacaaatgtaccagaagctacatattaacacaagtctcataagtaaaattcaagtgggagcaggcaacttgaactcagactaagcacca |
134 |
Q |
| |
|
||||| ||||| |||||||||||||||||| ||| |||| | |||||||| || ||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
20978702 |
tacacaactcttacaaatgtaccagaagctccattttaa------tttcataagttaagttcaagtgggagcaggcaacttgaactcaaactaagcacca |
20978609 |
T |
|
| Q |
135 |
gtaaagtggtgcaatttgtgagtaacagagttgtatagataaacaatatacgcaaaaaattgtatgatcaacaatatatcgtagaatattataagttagt |
234 |
Q |
| |
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|| |||||||||| |||||||||||||||| |||||||| || |||||| || |||||||||| || ||| ||| || ||||||| ||||||||||| |
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| T |
20978608 |
gttcagtggtgcaagttgtgagtaacagagtcgtatagat-aataatataagcttaaaattgtataataaacgata-ataatagaatactataagttagt |
20978511 |
T |
|
| Q |
235 |
ttgtataattatttcaacaagcaattagt-nnnnnnnnnnnnnnnnntgagataatcgtactaatgattgaaatttttatataacttcaccaaaaaatta |
333 |
Q |
| |
|
|||| ||||||||||||| |||| ||| | |||||||||| || |||| ||||||| || |||||||||||| | |||||| |
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| T |
20978510 |
ttgtgtaattatttcaactagcacttactaaaaaagaagaaaaacaatgagataatcttataaatggttgaaatattaatataacttcactcacaaatta |
20978411 |
T |
|
| Q |
334 |
aaatgaatatatgcgccttaaatatttcataagttcccttcatta |
378 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||| |
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|
| T |
20978410 |
aaatgaatttattcgccttaaatatttcataagttcccttcatta |
20978366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 461 - 695
Target Start/End: Original strand, 20980075 - 20980303
Alignment:
| Q |
461 |
agaagttcctgtaaactagataaatcaaaatggtcttctatgggactcaggatccccaaaggtttttattacatgttagcagctaagacttatctcagaa |
560 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||||| || |
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|
| T |
20980075 |
agaagttcctgtaagctagataaataaaaatggttctctatgtgactcaggatgcccaaaggtttttattacatgttagaagctaaggcttatcttaggc |
20980174 |
T |
|
| Q |
561 |
tgtgaacctcctataacctaaagttaattcaaataggtactacaagtacaagtgactaattaagtgacgcaaagagacacactttcagagtatcagcaag |
660 |
Q |
| |
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|||||| ||||||||| | ||||| ||||||||| |||| || ||| ||| |||||||| || | ||| ||||||||||| || ||||||||||| |
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|
| T |
20980175 |
tgtgaagctcctataagcaaaagtaaattcaaattggta--ac----acagatgattaattaagcgatgtaaacagacacacttttagtgtatcagcaag |
20980268 |
T |
|
| Q |
661 |
caatataatccttactatagagcattcacttaagt |
695 |
Q |
| |
|
|||||||| | |||||||||| ||||||||||| |
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|
| T |
20980269 |
aaatataattcctactatagagtgttcacttaagt |
20980303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 281 - 378
Target Start/End: Complemental strand, 20949322 - 20949224
Alignment:
| Q |
281 |
tgagataatcgtactaatgattgaaatttttatataacttcaccaaaaaattaaaa-tgaatatatgcgccttaaatatttcataagttcccttcatta |
378 |
Q |
| |
|
|||||||||| || |||| |||| || || |||||||||||| | ||||||||| ||||| ||| ||||||||| |||||||||||||||||||||| |
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| T |
20949322 |
tgagataatcttataaatggttgagatattaatataacttcactcacaaattaaaaatgaatttatccgccttaaaaatttcataagttcccttcatta |
20949224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 647 - 695
Target Start/End: Original strand, 44499959 - 44500007
Alignment:
| Q |
647 |
agagtatcagcaagcaatataatccttactatagagcattcacttaagt |
695 |
Q |
| |
|
||||||||| |||||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
44499959 |
agagtatcaacaagcagtataatccttgctatagagcatccacttaagt |
44500007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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