View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13772_low_4 (Length: 700)

Name: NF13772_low_4
Description: NF13772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13772_low_4
NF13772_low_4
[»] chr8 (9 HSPs)
chr8 (69-241)||(26981035-26981207)
chr8 (69-242)||(26083903-26084079)
chr8 (104-241)||(5334308-5334445)
chr8 (67-126)||(42932714-42932773)
chr8 (69-138)||(42315342-42315412)
chr8 (69-138)||(23828343-23828413)
chr8 (69-138)||(45244285-45244355)
chr8 (69-102)||(7496758-7496791)
chr8 (125-242)||(42934922-42935039)
[»] chr7 (6 HSPs)
chr7 (67-271)||(20077210-20077414)
chr7 (68-187)||(4407778-4407895)
chr7 (76-217)||(30061499-30061640)
chr7 (67-136)||(39742297-39742366)
chr7 (67-124)||(11072196-11072253)
chr7 (67-139)||(48850724-48850795)
[»] chr6 (8 HSPs)
chr6 (69-208)||(31442517-31442655)
chr6 (68-271)||(21762021-21762224)
chr6 (69-239)||(7867848-7868018)
chr6 (66-156)||(20915980-20916070)
chr6 (63-182)||(826689-826808)
chr6 (72-207)||(30836413-30836548)
chr6 (69-138)||(31665629-31665699)
chr6 (71-138)||(15296147-15296215)
[»] chr3 (15 HSPs)
chr3 (69-272)||(1529165-1529369)
chr3 (83-228)||(11582588-11582733)
chr3 (64-218)||(52041305-52041459)
chr3 (69-218)||(42655773-42655922)
chr3 (69-222)||(39484726-39484879)
chr3 (78-151)||(2241442-2241515)
chr3 (69-205)||(1141744-1141880)
chr3 (102-239)||(45069925-45070061)
chr3 (68-228)||(22424281-22424441)
chr3 (175-242)||(2241373-2241440)
chr3 (69-139)||(15291461-15291530)
chr3 (72-121)||(2241514-2241563)
chr3 (69-116)||(49235500-49235547)
chr3 (69-126)||(15996392-15996449)
chr3 (62-102)||(48910166-48910206)
[»] chr2 (10 HSPs)
chr2 (68-271)||(38996388-38996591)
chr2 (69-215)||(32281486-32281632)
chr2 (67-156)||(28125534-28125623)
chr2 (10-70)||(3406292-3406352)
chr2 (69-241)||(29280085-29280257)
chr2 (69-141)||(22625385-22625457)
chr2 (68-216)||(38955763-38955911)
chr2 (72-137)||(21922337-21922402)
chr2 (69-139)||(6667463-6667532)
chr2 (69-102)||(28926075-28926108)
[»] chr5 (6 HSPs)
chr5 (67-193)||(6697933-6698059)
chr5 (69-239)||(19557813-19557982)
chr5 (106-252)||(9045160-9045306)
chr5 (68-138)||(37337322-37337393)
chr5 (67-204)||(31981791-31981927)
chr5 (69-138)||(26110688-26110758)
[»] chr4 (9 HSPs)
chr4 (68-205)||(27067873-27068010)
chr4 (72-238)||(9451245-9451411)
chr4 (69-187)||(10427600-10427717)
chr4 (69-184)||(9199750-9199865)
chr4 (69-131)||(9199512-9199574)
chr4 (68-138)||(12094856-12094926)
chr4 (68-217)||(24257702-24257852)
chr4 (112-184)||(9201332-9201404)
chr4 (69-131)||(6898760-6898822)
[»] chr1 (2 HSPs)
chr1 (68-215)||(15700720-15700867)
chr1 (69-215)||(22964007-22964153)


Alignment Details
Target: chr8 (Bit Score: 105; Significance: 4e-52; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 69 - 241
Target Start/End: Original strand, 26981035 - 26981207
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 168  Q
    |||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| || ||||| |||| |||| ||||||    
T  26981035 atctttcttactaaagcttgtttgatcaagcaatatcataccctaattttaacctaatatttttcctccatcatccaagcattaaattctccttagtgtt 26981134  T
Q  169 tttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatgta 241  Q
    ||||||||||||| || || ||||||| ||||||||| ||||||||||||| || ||||| || |||||||||    
T  26981135 tttcctaatcatcgctataggttcaaaatctaaatttccctcccacaacaaatgtagtctgccaatgcatgta 26981207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 69 - 242
Target Start/End: Original strand, 26083903 - 26084079
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 168  Q
    ||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| ||||||||||  | ||||| |||| | || |||| |    
T  26083903 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattttccctccatcatcaaagcattaaattcttcttagtgct 26084002  T
Q  169 tttccta---atcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatgtac 242  Q
    |||||||   |||||||||||| ||||||| || |||||| |||| |||| || ||  ||||| || ||||||||||    
T  26084003 tttcctaatcatcatcactctaggttcaaaatccaaatttccctctcacaccacttttagtctgccgatgcatgtac 26084079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 104 - 241
Target Start/End: Original strand, 5334308 - 5334445
Alignment:
Q  104 tcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtttttcctaatcatcactctaagttcaaattctaaat 203  Q
    |||||||||||||||||||||| ||||| |||||||||| || ||||| |||| || | | || ||||||||||||||||| || ||| ||| |||||||    
T  5334308 tcataccctaattttaacctaagattttccctccatcatccaagcattaaattctctttaatgcttttcctaatcatcactataggttgaaaatctaaat 5334407  T
Q  204 tttcctcccacaacaattggagtcttcctatgcatgta 241  Q
    || ||||||||||||| || ||||| || |||||||||    
T  5334408 ttccctcccacaacaaatgtagtctgccgatgcatgta 5334445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 42932714 - 42932773
Alignment:
Q  67 aaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaat 126  Q
    ||||||||||||||||||||||| || |||||| || ||||| |||||||||||||||||    
T  42932714 aaatctttcttactaaagcttgtctgatcaagcaatatcatatcctaattttaacctaat 42932773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 42315342 - 42315412
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaatt-ttaacctaatatttttcctcca 138  Q
    ||||||||||||||||||||||||||||||||||     ||||||||| ||||||||||||||| ||||||    
T  42315342 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcca 42315412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 23828343 - 23828413
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaa-ttttaacctaatatttttcctcca 138  Q
    ||||||||||||| ||||||||||||||||||||     ||||||| ||||||||||||||||| ||||||    
T  23828343 atctttcttactagagcttgtttggtcaagctattagtaaccctaatttttaacctaatattttccctcca 23828413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 45244355 - 45244285
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaatt-ttaacctaatatttttcctcca 138  Q
    |||||||||||||||| |||| ||||||||||||     ||||||||| ||||||||||||||| ||||||    
T  45244355 atctttcttactaaagtttgtctggtcaagctattagtaaccctaattcttaacctaatattttccctcca 45244285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 7496758 - 7496791
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctat 102  Q
    |||||||||||||||||||||||| |||||||||    
T  7496758 atctttcttactaaagcttgtttgatcaagctat 7496791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 242
Target Start/End: Original strand, 42934922 - 42935039
Alignment:
Q  125 atatttttcctccatcatacatgcatttaattttcctcagtgtttttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattgga 224  Q
    ||||||| ||||||||||  |  |||| |||| |||| | || ||||||||||||||||  || ||||||| || ||||||||||| |||| || ||  |    
T  42934922 atattttccctccatcatcaaaacattaaattctccttaatgcttttcctaatcatcaccttaggttcaaaatccaaattttcctctcacaccactttta 42935021  T
Q  225 gtcttcctatgcatgtac 242  Q
    |||| || ||||||||||    
T  42935022 gtctgccgatgcatgtac 42935039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 4e-52; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 67 - 271
Target Start/End: Complemental strand, 20077414 - 20077210
Alignment:
Q  67 aaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtg 166  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| || ||||| ||||  ||| ||||    
T  20077414 aaatctttcttactaaagcttgtttggtcaagcaatatcataccctaattttaacctaatattttccctccatcatccaagcattaaattcaccttagtg 20077315  T
Q  167 tttttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatgtacgtaaggcatatatatgatggcatt 266  Q
     ||||||||||||||||| || |||||||||||||||||  |||||| ||||||| |||| |    |||||||||  ||||||||||  |||||||||||    
T  20077314 cttttcctaatcatcactttaggttcaaattctaaatttcgctcccataacaattagagtttgtggatgcatgtatctaaggcatatggatgatggcatt 20077215  T
Q  267 taata 271  Q
    |||||    
T  20077214 taata 20077210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 68 - 187
Target Start/End: Original strand, 4407778 - 4407895
Alignment:
Q  68 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 167  Q
    ||||||||||||||||||  || ||||||||| || |||||||||||||||||||||||||||| |||||||||  ||  |||| |||| |||| |||||    
T  4407778 aatctttcttactaaagc--gtctggtcaagcaatatcataccctaattttaacctaatattttccctccatcacccaaacattaaattctccttagtgt 4407875  T
Q  168 ttttcctaatcatcactcta 187  Q
    |||||||||||||| |||||    
T  4407876 ttttcctaatcatcgctcta 4407895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 76 - 217
Target Start/End: Original strand, 30061499 - 30061640
Alignment:
Q  76 ttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtttttccta 175  Q
    |||||||||||||| || |||||||||||||||||||||||| | ||||||||||| |||||||  |||| | |||||||| | |  |||| || |||||    
T  30061499 ttactaaagcttgtctgatcaagctatctcataccctaatttaaccctaatattttccctccattgtacaagtatttaattcttcaaagtgcttatccta 30061598  T
Q  176 atcatcactctaagttcaaattctaaattttcctcccacaac 217  Q
    |||||||||||||  | |||||| || ||| |||||||||||    
T  30061599 atcatcactctaatcttaaattcaaattttccctcccacaac 30061640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 39742366 - 39742297
Alignment:
Q  67 aaatctttcttactaaagcttgtttggtcaagctatctcat-accctaattttaacctaatatttttcctc 136  Q
    |||||||||||||||||||||||||| ||||||||| | || |||||||| ||||||||||||||| ||||    
T  39742366 aaatctttcttactaaagcttgtttgatcaagctat-tgataaccctaatcttaacctaatattttccctc 39742297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 11072253 - 11072196
Alignment:
Q  67 aaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaaccta 124  Q
    ||||||||||| |||||||||||  |||||||| ||| |  |||||||||||||||||    
T  11072253 aaatctttctttctaaagcttgtccggtcaagcaatccctaaccctaattttaaccta 11072196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 48850724 - 48850795
Alignment:
Q  67 aaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccat 139  Q
    ||||||||||| ||||||||||| || |||||||||    ||||||||| |||||||||| |||| |||||||    
T  48850724 aaatctttctttctaaagcttgtctgatcaagctattgtttaccctaatcttaacctaat-ttttccctccat 48850795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 1e-46; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 31442517 - 31442655
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 168  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||| || ||||| |||| |||| |||| |    
T  31442517 atctttcttactaaagcttgtttggtcaagcaatcacataccctaattttaacctaatattttccctccatcatccaagcattaaattctcctaagtgct 31442616  T
Q  169 tttcctaatcatcactctaagttcaaattctaaattttcc 208  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  31442617 tttcctaatcatcactctaagttcaaattc-aaattttcc 31442655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 68 - 271
Target Start/End: Original strand, 21762021 - 21762224
Alignment:
Q  68 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 167  Q
    |||||||||||||||| ||||| || |||||||||  |  ||||||||||||||||| |||||| |||||||||  ||   ||||||||||| | ||||     
T  21762021 aatctttcttactaaaacttgtctgatcaagctattgctcaccctaattttaacctactattttccctccatcacccaattatttaattttcgttagtgc 21762120  T
Q  168 ttttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatgtacgtaaggcatatatatgatggcattt 267  Q
    |||||||| ||||||  |||||||||| || ||||||| |||||||||||| ||| | ||| || ||||||| || ||||| || |  |||||| |||||    
T  21762121 ttttcctactcatcaagctaagttcaatttttaaatttccctcccacaacatttgcattctgccgatgcatgcacctaaggaatgtgaatgatgacattt 21762220  T
Q  268 aata 271  Q
    ||||    
T  21762221 aata 21762224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 69 - 239
Target Start/End: Complemental strand, 7868018 - 7867848
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 168  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||| | ||||||||||| |||||||  |||| |||||||||||| || |||| |    
T  7868018 atctttcttactaaagcttatctggtcaagctatctcataccctaatttaaccctaatattttccctccattgtacaagcatttaatttttctaagtgct 7867919  T
Q  169 tttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatg 239  Q
    | || |||| ||||| | ||  |||||||| || ||| ||||||| |||  ||| ||||| || |||||||    
T  7867918 tatcttaatgatcacacaaatctcaaattcaaattttccctcccataactcttgaagtctgccgatgcatg 7867848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 20916070 - 20915980
Alignment:
Q  66 caaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaatt 156  Q
    |||||||||||||||||||||||| || |||||| || | ||||| |||||||||||||||||||| |||||||||| || ||||| ||||    
T  20916070 caaatctttcttactaaagcttgtctgatcaagcaatatgataccttaattttaacctaatattttccctccatcatccaagcattaaatt 20915980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 182
Target Start/End: Complemental strand, 826808 - 826689
Alignment:
Q  63 aaacaaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctc 162  Q
    ||||| ||||||||||||||| ||||| ||||||||||||     ||| |||||||||||||||||||| ||||||||   ||  |||||||||||| |     
T  826808 aaacacatctttcttactaaaacttgtctggtcaagctattgttcaccttaattttaacctaatattttccctccatcgcccaatcatttaattttcgtt 826709  T
Q  163 agtgtttttcctaatcatca 182  Q
    |||| |||||||| ||||||    
T  826708 agtgcttttcctactcatca 826689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 207
Target Start/End: Complemental strand, 30836548 - 30836413
Alignment:
Q  72 tttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgttttt 171  Q
    |||||||||||||||||| || |||||| ||     ||||||||||||| |||||||||| ||||||||   || ||||||||||||| | |||| |||     
T  30836548 tttcttactaaagcttgtctgatcaagcaattgttcaccctaattttaatctaatattttccctccatcccccaagcatttaattttcatgagtgctttc 30836449  T
Q  172 cctaatcatcactctaagttcaaattctaaattttc 207  Q
    |||| ||| ||  |||||||||| || |||||||||    
T  30836448 cctactcagcaagctaagttcaatttttaaattttc 30836413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 31665699 - 31665629
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaatt-ttaacctaatatttttcctcca 138  Q
    ||||||||||||||||||||||||||||||||||     ||||||||| ||||||||||||||| ||||||    
T  31665699 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcca 31665629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 15296147 - 15296215
Alignment:
Q  71 ctttcttactaaagcttgtttggtcaagctatctcataccctaa-ttttaacctaatatttttcctcca 138  Q
    ||||||||||||||||||||| ||||||||||     ||||||| ||||||||||||||||| ||||||    
T  15296147 ctttcttactaaagcttgttttgtcaagctataagtaaccctaatttttaacctaatattttccctcca 15296215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 9e-38; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 69 - 272
Target Start/End: Original strand, 1529165 - 1529369
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaatt-ttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 167  Q
    ||||||||||||||||||||||||||||||||||     ||||||||| |||||||||| |||| ||||||||||||| ||| |||||| || | | |||    
T  1529165 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaattttttccctccatcatacaagcaattaattctcgttaatgt 1529264  T
Q  168 ttttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatgtacgtaaggcatatatatgatggcattt 267  Q
    |||||||| ||||||  ||||||||||||| ||||||| |||||||||| || | |||||| || |||||| ||| ||||||||||  ||||| |||||     
T  1529265 ttttcctactcatcaaactaagttcaaattttaaatttccctcccacaaaaaattgagtctgccgatgcatctacctaaggcatatggatgattgcatta 1529364  T
Q  268 aatag 272  Q
    |||||    
T  1529365 aatag 1529369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 83 - 228
Target Start/End: Original strand, 11582588 - 11582733
Alignment:
Q  83 agcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtttttcctaatcatca 182  Q
    ||||||| ||||||||| || |||||||||||||||||||||||||||| ||||| |||| ||  |||| |||| | || ||||||||||||||| ||||    
T  11582588 agcttgtctggtcaagcaatatcataccctaattttaacctaatattttccctccgtcatccaaacattaaattcttcttagtgtttttcctaataatca 11582687  T
Q  183 ctctaagttcaaattctaaattttcctcccacaacaattggagtct 228  Q
    ||||| ||||||||  |||||||||||||||||||| ||| |||||    
T  11582688 ctctaggttcaaatcttaaattttcctcccacaacagttgtagtct 11582733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 64 - 218
Target Start/End: Complemental strand, 52041459 - 52041305
Alignment:
Q  64 aacaaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctca 163  Q
    |||| ||||||||||||||||||||| ||||||||||||     |||||||||||||||||||||||| | |||||||  || ||||||||||||  | |    
T  52041459 aacatatctttcttactaaagcttgtctggtcaagctattgttcaccctaattttaacctaatattttccttccatcacccaagcatttaattttggtta 52041360  T
Q  164 gtgtttttcctaatcatcactctaagttcaaattctaaattttcctcccacaaca 218  Q
    ||| |||||||| ||||||  |||||||||| || ||||||| ||||| ||||||    
T  52041359 gtgcttttcctactcatcaagctaagttcaatttttaaatttccctcctacaaca 52041305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 69 - 218
Target Start/End: Original strand, 42655773 - 42655922
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 168  Q
    ||||||||||| ||||||||| ||||||||||||     |||||||||||||| ||||||||| ||| |||||  || ||||||||||||  | ||||||    
T  42655773 atctttcttaccaaagcttgtctggtcaagctattgttcaccctaattttaacataatattttcccttcatcacccaagcatttaattttgattagtgtt 42655872  T
Q  169 tttcctaatcatcactctaagttcaaattctaaattttcctcccacaaca 218  Q
    ||||||| ||||||  |||||||||| || ||||||| ||||||| ||||    
T  42655873 tttcctactcatcaagctaagttcaatttttaaatttccctcccataaca 42655922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 39484879 - 39484726
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcat-accctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 167  Q
    |||||||||||||||||||||||||||||||||| |  | |||||| ||||||||||||||||| |||||||||  ||  |||||||||||  | | ||     
T  39484879 atctttcttactaaagcttgtttggtcaagctatatgttcaccctagttttaacctaatattttccctccatcacccaaacatttaattttaattaatgc 39484780  T
Q  168 ttttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattg 222  Q
    |||||||| |||||  ||||||||||| || |||| || ||| ||||||||||||    
T  39484779 ttttcctactcatctttctaagttcaatttttaaa-ttccctgccacaacaattg 39484726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 2241515 - 2241442
Alignment:
Q  78 actaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatt 151  Q
    |||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||    
T  2241515 actaaagcttgtttcgtcaagcaatctcataccttaattttaacctaatatttttcctctatcatacaagcatt 2241442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 69 - 205
Target Start/End: Original strand, 1141744 - 1141880
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 168  Q
    ||||||||||||||||||||||||||||||| ||     || |||||||||| |||||||||| ||||||||   || ||||||||||||| | ||||||    
T  1141744 atctttcttactaaagcttgtttggtcaagcaattgttcactctaattttaatctaatattttccctccatcccccaagcatttaattttcattagtgtt 1141843  T
Q  169 tttcctaatcatcactctaagttcaaattctaaattt 205  Q
    ||||||| ||| ||  || ||||||| || |||||||    
T  1141844 tttcctactcaacaagctgagttcaatttttaaattt 1141880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 239
Target Start/End: Original strand, 45069925 - 45070061
Alignment:
Q  102 tctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtttttcctaatcatcactctaagttcaaattctaa 201  Q
    |||| ||||||||||| | ||||||||||| |||||||  |||| |||||||||||| || |||| || |||||||||||||   ||  |||||||| ||    
T  45069925 tctcctaccctaatttaaccctaatattttccctccattgtacaagcatttaatttttctaagtgcttatcctaatcatcacataaatctcaaattc-aa 45070023  T
Q  202 attttcctcccacaacaattggagtcttcctatgcatg 239  Q
    |||||||||||| |||  ||| ||||| || |||||||    
T  45070024 attttcctcccataactcttgaagtctgccgatgcatg 45070061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 68 - 228
Target Start/End: Complemental strand, 22424441 - 22424281
Alignment:
Q  68 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 167  Q
    ||||||||||||||||| || | ||||||||||||     |||||||||||||||||||||||| |||||||||   |  |||||||||||  | |||      
T  22424441 aatctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacctaaacatttaatttttgttagtac 22424342  T
Q  168 ttttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtct 228  Q
    |||||||| |||| |  ||||||| || || | ||||| |||||||||||  |||||||||    
T  22424341 ttttcctactcattaagctaagttgaatttttgaatttccctcccacaacctttggagtct 22424281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 2241440 - 2241373
Alignment:
Q  175 aatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatgtac 242  Q
    |||||||||||||| |||||| ||||||||| |||||||||||||||| | ||| || ||||||||||    
T  2241440 aatcatcactctaaattcaaaatctaaatttccctcccacaacaattgcactctgccgatgcatgtac 2241373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 15291461 - 15291530
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccat 139  Q
    ||||||||||||||||||||||||||||||||||    ||||||||| |||||||||| |||| |||||||    
T  15291461 atctttcttactaaagcttgtttggtcaagctattgtttaccctaatcttaacctaat-ttttccctccat 15291530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 2241563 - 2241514
Alignment:
Q  72 tttcttactaaagcttgtttggtcaagctatctcataccctaattttaac 121  Q
    |||||||||||||||||||| ||||||| || ||||||| ||||||||||    
T  2241563 tttcttactaaagcttgtttcgtcaagcaatttcataccttaattttaac 2241514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 49235547 - 49235500
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaatt 116  Q
    |||||||||||||||| ||||||||||||||||||   ||||||||||    
T  49235547 atctttcttactaaagtttgtttggtcaagctatcatttaccctaatt 49235500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 15996449 - 15996392
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaat 126  Q
    ||||||||||||||||||||| || |||||||||    |||||||||| |||||||||    
T  15996449 atctttcttactaaagcttgtctgatcaagctattgtttaccctaattctaacctaat 15996392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 48910206 - 48910166
Alignment:
Q  62 gaaacaaatctttcttactaaagcttgtttggtcaagctat 102  Q
    |||| ||||||||||||||| |||||||||| |||||||||    
T  48910206 gaaaaaaatctttcttactagagcttgtttgatcaagctat 48910166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 9e-35; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 68 - 271
Target Start/End: Complemental strand, 38996591 - 38996388
Alignment:
Q  68 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 167  Q
    |||||||||||||||||||||| || ||||||||| |  ||||||||||||||||||||||||| ||||||||| |||  ||||||||| | || |||||    
T  38996591 aatctttcttactaaagcttgtctgatcaagctatatgttaccctaattttaacctaatattttccctccatcaaacaaacatttaattctgcttagtgt 38996492  T
Q  168 ttttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatgtacgtaaggcatatatatgatggcattt 267  Q
    |||||||| ||||||   |||||||||||| ||||||| ||||| ||||| |||   || | || |||||||||| | ||| || |  ||||||||||||    
T  38996491 ttttcctactcatcaagttaagttcaaattttaaatttccctcctacaactatttttgtttgccgatgcatgtacatgaggaatgtgaatgatggcattt 38996392  T
Q  268 aata 271  Q
    ||||    
T  38996391 aata 38996388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 69 - 215
Target Start/End: Original strand, 32281486 - 32281632
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 168  Q
    |||||||||||||||| |||||||||||||||||     ||||||||||||||||| |||||| |||||||| |||| ||||| |||| | |  |||| |    
T  32281486 atctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaacctagtattttccctccatcctacaagcattaaattcttccaagtgct 32281585  T
Q  169 tttcctaatcatcactctaagttcaaattctaaattttcctcccaca 215  Q
    | |||||||||||||||||| || |||||| |||||| |||||||||    
T  32281586 tatcctaatcatcactctaattttaaattcaaaatttgcctcccaca 32281632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 28125534 - 28125623
Alignment:
Q  67 aaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaatt 156  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||| |||||||  |||| ||||||||||    
T  28125534 aaatctttcttactaaagcttgtctggtcaagctatctcataccctaatttaaccctaatattttccctccattgtacaagcatttaatt 28125623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 3406292 - 3406352
Alignment:
Q  10 atatatgaagctttaaaatgtagcttatacttggacgtgaataataaatgtggaaacaaat 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3406292 atatatgaagctttaaaatgtagcttatacttggacgtgaataataaatgtggaaacaaat 3406352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 69 - 241
Target Start/End: Original strand, 29280085 - 29280257
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 168  Q
    ||||||||||||||| ||||| || | |||||||     |||||||||||||||||||||||| |||| ||||   | |||| |||||||| | |||| |    
T  29280085 atctttcttactaaaacttgtctgatgaagctattgttcaccctaattttaacctaatattttccctcaatcacctaagcatgtaattttcgttagtgct 29280184  T
Q  169 tttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatgta 241  Q
    |||| || ||||||  |||||||||| || ||||||| |||||||||||   |||||||| || |||||||||    
T  29280185 tttcgtactcatcaagctaagttcaatttttaaatttccctcccacaacctatggagtctgccaatgcatgta 29280257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 22625457 - 22625385
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatca 141  Q
    ||||||||||||||| ||||| ||||||||| ||   |||||||||||||||||||||||||| |||||||||    
T  22625457 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatca 22625385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 68 - 216
Target Start/End: Complemental strand, 38955911 - 38955763
Alignment:
Q  68 aatctttcttactaaagcttgtttggtcaagctatctcata-ccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtg 166  Q
    |||||| ||||||||||||| | || |||| |||| | ||| |||||||| |||||||||||||| |||||||||  || ||||||||||||  | | ||    
T  38955911 aatcttacttactaaagcttatctgatcaaactat-tgataaccctaattctaacctaatattttccctccatcacccaagcatttaatttttgttaatg 38955813  T
Q  167 tttttcctaatcatcactctaagttcaaattctaaattttcctcccacaa 216  Q
     |||||||| ||| ||   |||| ||||| ||||||||| ||||||||||    
T  38955812 cttttcctactcagcaaggtaagctcaaaatctaaatttccctcccacaa 38955763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 21922337 - 21922402
Alignment:
Q  72 tttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctcc 137  Q
    |||||| ||||||||||| || |||||||||  | ||||||||| ||||||||||||||| |||||    
T  21922337 tttctttctaaagcttgtctgatcaagctataacttaccctaatcttaacctaatattttccctcc 21922402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 6667463 - 6667532
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccat 139  Q
    ||||||||| ||||||||||||||||||||||||    |||||||||  ||||||||| |||| |||||||    
T  6667463 atctttctttctaaagcttgtttggtcaagctattgtttaccctaatcctaacctaat-ttttccctccat 6667532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 28926075 - 28926108
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctat 102  Q
    ||||||||||||||||||||| ||||||||||||    
T  28926075 atctttcttactaaagcttgtctggtcaagctat 28926108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 9e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 67 - 193
Target Start/End: Original strand, 6697933 - 6698059
Alignment:
Q  67 aaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtg 166  Q
    ||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||||||||||| |||||||||| || ||||| |||| || | ||||    
T  6697933 aaatctttcttactaaaacttgtctggtcaagcaatctcataccttaattttaacctaatattttccctccatcatgcaagcattaaattctcttgagtg 6698032  T
Q  167 tttttcctaatcatcactctaagttca 193  Q
     ||||| |||||||| |||||||||||    
T  6698033 cttttcataatcatcgctctaagttca 6698059  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 69 - 239
Target Start/End: Complemental strand, 19557982 - 19557813
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 168  Q
    ||||||||||||||||||| | |||| |||||||||||||||||||||| | |||||| ||||| ||||||  |||| |||||||||||| || |||| |    
T  19557982 atctttcttactaaagcttatctggttaagctatctcataccctaatttaaccctaatgttttt-ctccattgtacaagcatttaatttttctaagtgct 19557884  T
Q  169 tttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatg 239  Q
    | ||||||||||||| | ||  |||||||| || ||| ||||||| |||  ||| ||||| || |||||||    
T  19557883 tatcctaatcatcacacaaatctcaaattcaaattttccctcccataactcttgaagtctgccgatgcatg 19557813  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 106 - 252
Target Start/End: Original strand, 9045160 - 9045306
Alignment:
Q  106 ataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtttttcctaatcatcactctaagttcaaattctaaattt 205  Q
    |||||||||||||||||||||||||| ||||||||||  |  |||| |||| |||| |||| |||||||||||||||||| | ||||||| || ||||||    
T  9045160 ataccctaattttaacctaatattttccctccatcatcaaaacattaaattctccttagtgcttttcctaatcatcactcaaggttcaaaatccaaattt 9045259  T
Q  206 tcctcccacaacaattggagtcttcctatgcatgtacgtaaggcata 252  Q
     |||| |||| || ||  ||||| || ||||||||||  ||||||||    
T  9045260 ccctctcacaccacttttagtctgccgatgcatgtacccaaggcata 9045306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 37337322 - 37337393
Alignment:
Q  68 aatctttcttactaaagcttgtttggtcaagctatctcataccctaa-ttttaacctaatatttttcctcca 138  Q
    |||||||||||||||||||||||||||||||||||     ||||||| ||||||||||||||||| ||||||    
T  37337322 aatctttcttactaaagcttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctcca 37337393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 67 - 204
Target Start/End: Original strand, 31981791 - 31981927
Alignment:
Q  67 aaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtg 166  Q
    |||||||| ||||||||||||||||| |||||| ||     | |||||||||||||||||||||| ||| |||| | || ||||||||||||| | ||||    
T  31981791 aaatcttttttactaaagcttgtttgatcaagcaattgttcaacctaattttaacctaatattttccctacatcct-caagcatttaattttcatgagtg 31981889  T
Q  167 tttttcctaatcatcactctaagttcaaattctaaatt 204  Q
     |||||||| ||| ||  ||||||| || || ||||||    
T  31981890 cttttcctactcagcaagctaagtttaatttttaaatt 31981927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 26110688 - 26110758
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaa-ttttaacctaatatttttcctcca 138  Q
    ||||||||||||||| ||||||||||||||||||     ||||||| ||||||||||||||||| ||||||    
T  26110688 atctttcttactaaaacttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctcca 26110758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 68 - 205
Target Start/End: Original strand, 27067873 - 27068010
Alignment:
Q  68 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 167  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||||||||| |||||||||| |||  |||||| | |||||||||| |||| ||||     
T  27067873 aatctttcttactaaagcttgtttggtcaaactatcctataccctaattttaatctaatattttcccttgatcataaacgcatttaattctccttagtgc 27067972  T
Q  168 ttttcctaatcatcactctaagttcaaattctaaattt 205  Q
    |||||||| ||||||  ||||||||||| | |||||||    
T  27067973 ttttcctactcatcaagctaagttcaaaatttaaattt 27068010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 72 - 238
Target Start/End: Original strand, 9451245 - 9451411
Alignment:
Q  72 tttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgttttt 171  Q
    |||||||||||||||||| ||||||||||||     |||||||||||||||||||||||| |||||||||  || ||||||||||||| | |||| ||||    
T  9451245 tttcttactaaagcttgtctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaagcatttaattttcgttagtgctttt 9451344  T
Q  172 cctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcat 238  Q
    | || ||||||  |||||||||| || ||||||| |||||||||||   |||||||| || ||||||    
T  9451345 cgtactcatcaagctaagttcaatttttaaatttccctcccacaacctatggagtctgccaatgcat 9451411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 69 - 187
Target Start/End: Complemental strand, 10427717 - 10427600
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 168  Q
    |||||| ||| ||||| |||||||||||||| || |||||||||||||||||||||||| ||| |||||||||| || ||||| |||| | || ||||||    
T  10427717 atcttttttattaaaggttgtttggtcaagcaatatcataccctaattttaacctaata-tttccctccatcatccaagcattaaattcttcttagtgtt 10427619  T
Q  169 tttcctaatcatcactcta 187  Q
    |||||||||||||||||||    
T  10427618 tttcctaatcatcactcta 10427600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 69 - 184
Target Start/End: Original strand, 9199750 - 9199865
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 168  Q
    ||||||||||||||||||||| ||||||||| || ||||| || | | ||||||||||||||| |||||||||| || ||||| |||| |||| |||  |    
T  9199750 atctttcttactaaagcttgtctggtcaagcaatatcatatcccactattaacctaatattttccctccatcatccaagcattaaattctccttagttct 9199849  T
Q  169 tttcctaatcatcact 184  Q
    ||||||||||||||||    
T  9199850 tttcctaatcatcact 9199865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 9199512 - 9199574
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttt 131  Q
    ||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||    
T  9199512 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatatttt 9199574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 12094926 - 12094856
Alignment:
Q  68 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctcca 138  Q
    |||||||||||||||||||||||||||||||||||   | |||||||||||||||||||||||| ||||||    
T  12094926 aatctttcttactaaagcttgtttggtcaagctattagaaaccctaattttaacctaatattttccctcca 12094856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 68 - 217
Target Start/End: Original strand, 24257702 - 24257852
Alignment:
Q  68 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgca-tttaattttcctcagtg 166  Q
    |||||||||||||||||||||||||||||||| ||     ||||||||||||||||||||||||||||||||||   | ||| ||||||| |  |  |||    
T  24257702 aatctttcttactaaagcttgtttggtcaagcaattgttcaccctaattttaacctaatatttttcctccatcacctaagcattttaattgtagttggtg 24257801  T
Q  167 tttttcctaatcatcactctaagttcaaattctaaattttcctcccacaac 217  Q
     |||||||||||||||  |||||||||| || || || | |||||||||||    
T  24257802 cttttcctaatcatcaaactaagttcaatttttatatctccctcccacaac 24257852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 9201332 - 9201404
Alignment:
Q  112 taattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtttttcctaatcatcact 184  Q
    |||||||||||||||||||| || ||||||| || ||||| |||| |||| |||  |||||||||||||||||    
T  9201332 taattttaacctaatattttcccaccatcatccaagcattaaattctccttagttcttttcctaatcatcact 9201404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 6898822 - 6898760
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttt 131  Q
    |||||||||||||||||||||||| |||||||||     |||||||| |||||||||||||||    
T  6898822 atctttcttactaaagcttgtttgatcaagctattggtaaccctaatcttaacctaatatttt 6898760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 68 - 215
Target Start/End: Original strand, 15700720 - 15700867
Alignment:
Q  68 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 167  Q
    ||||||||||||||||| |||||||||||||||||     ||||||||||||||||| |||||| |||||||| |||| ||||| |||| | |  ||||     
T  15700720 aatctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaacctagtattttccctccatcctacaagcattaaattcttccaagtgc 15700819  T
Q  168 ttttcctaatcatcactctaagttcaaattctaaattttcctcccaca 215  Q
    || |||||||||||||||||| || |||||| |||||| |||||||||    
T  15700820 ttatcctaatcatcactctaattttaaattcaaaatttgcctcccaca 15700867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 69 - 215
Target Start/End: Original strand, 22964007 - 22964153
Alignment:
Q  69 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 168  Q
    ||||| ||||||||||||||| ||||||||||||     ||||||||| |||||||||||||| |||||||||  || ||||||||||||  | |||| |    
T  22964007 atcttacttactaaagcttgtctggtcaagctattggtaaccctaattctaacctaatattttccctccatcaaccaagcatttaatttttgttagtgct 22964106  T
Q  169 tttcctaatcatcactctaagttcaaattctaaattttcctcccaca 215  Q
    ||||||| ||| ||   |||| ||||| ||||||||| |||||||||    
T  22964107 tttcctactcagcaaggtaagctcaaaatctaaatttccctcccaca 22964153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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