View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13772_low_6 (Length: 581)

Name: NF13772_low_6
Description: NF13772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13772_low_6
NF13772_low_6
[»] chr3 (5 HSPs)
chr3 (17-423)||(35775739-35776145)
chr3 (32-248)||(35854229-35854445)
chr3 (32-219)||(35759518-35759705)
chr3 (490-567)||(35775595-35775672)
chr3 (32-249)||(35868837-35869054)
[»] scaffold0891 (2 HSPs)
scaffold0891 (23-253)||(157-387)
scaffold0891 (490-549)||(2433-2491)
[»] scaffold1267 (1 HSPs)
scaffold1267 (32-249)||(136-353)
[»] scaffold1268 (1 HSPs)
scaffold1268 (32-249)||(136-353)
[»] chr1 (4 HSPs)
chr1 (492-569)||(16426367-16426444)
chr1 (492-544)||(3387615-3387667)
chr1 (493-534)||(30883156-30883197)
chr1 (490-546)||(35677736-35677792)
[»] chr5 (2 HSPs)
chr5 (492-555)||(4111966-4112029)
chr5 (513-556)||(41815783-41815826)
[»] scaffold0012 (1 HSPs)
scaffold0012 (492-544)||(209151-209203)
[»] chr4 (1 HSPs)
chr4 (490-534)||(35530033-35530077)
[»] chr2 (6 HSPs)
chr2 (492-544)||(41848979-41849031)
chr2 (490-553)||(16661325-16661388)
chr2 (492-544)||(38783760-38783812)
chr2 (492-557)||(17651206-17651271)
chr2 (523-564)||(44650139-44650180)
chr2 (284-328)||(26576433-26576477)
[»] chr8 (4 HSPs)
chr8 (492-543)||(13097405-13097456)
chr8 (492-544)||(28869811-28869863)
chr8 (495-544)||(28867248-28867297)
chr8 (492-544)||(18393701-18393753)
[»] chr7 (2 HSPs)
chr7 (495-557)||(9730060-9730122)
chr7 (493-534)||(43837341-43837382)
[»] chr6 (1 HSPs)
chr6 (492-544)||(2602050-2602102)
[»] scaffold1723 (1 HSPs)
scaffold1723 (495-544)||(489-538)


Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Complemental strand, 35776145 - 35775739
Alignment:
Q  17 agaaaaaactttcacgctcctttgaaagagcttgtgaaaaagctcaacacttcttcaccacatattccagttacttgcataattgctgatggatttttgg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  35776145 agaaaaaactttcacgctcctttgaaagagcttgtgaaaaagctcaacacttcttcaccacatattccagttacttgcataattgctgatggattttcgg 35776046  T
Q  117 gctttgctggaaaagtggcaaaggatttggggattcaagaactagtgttttggactgcttctgcttgtggcatgttgggatatttacagtacgatgagct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35776045 gctttgctggaaaagtggcaaaggatttggggattcaagaactagtgttttggactgcttctgcttgtggcatgttgggatatttacagtacgatgagct 35775946  T
Q  217 tgttgagaggggaattattcccttcaaaggtaagttagtatctctttctgattgttttctgcatatatatgaagcacggacacatctatgactagacttg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35775945 tgttgagaggggaattattcccttcaaaggtaagttagtatctctttctgattgttttctgcatatatatgaagcacggacacatctatgactagacttg 35775846  T
Q  317 ttgcggtgtccgcaacttgtatgacactccttcgacacatctcatatatatctgtaagagtcaaagatgagtttagaagtaaaatccaatgattacaaca 416  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35775845 ttgcggtgtccgcaacctgtatgacactccttcgacacatctcatatatatctgtaagagtcaaagatgtgtttagaagtaaaatccaatgattacaaca 35775746  T
Q  417 ttttagc 423  Q
    |||||||    
T  35775745 ttttagc 35775739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 32 - 248
Target Start/End: Complemental strand, 35854445 - 35854229
Alignment:
Q  32 gctcctttgaaagagcttgtgaaaaagctcaacacttcttcaccacatattccagttacttgcataattgctgatggatttttgggctttgctggaaaag 131  Q
    |||||||| ||||||||| | || ||||| ||||| || ||||| ||||||||||||||||||||||||||||||||  |  |||| |||||||||| ||    
T  35854445 gctcctttcaaagagcttatcaataagcttaacacctcatcacctcatattccagttacttgcataattgctgatggcataatgggatttgctggaagag 35854346  T
Q  132 tggcaaaggatttggggattcaagaactagtgttttggactgcttctgcttgtggcatgttgggatatttacagtacgatgagcttgttgagaggggaat 231  Q
    |||| |||||||| || ||| |||| |||  ||||||||||||||||||||||||| |  | |||||||| || || |||||||||||| | || |||||    
T  35854345 tggctaaggatttaggcattaaagagctacagttttggactgcttctgcttgtggctttgtcggatatttgcaatatgatgagcttgttaaaagaggaat 35854246  T
Q  232 tattcccttcaaaggta 248  Q
    | |||| ||||||||||    
T  35854245 tcttccattcaaaggta 35854229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 32 - 219
Target Start/End: Complemental strand, 35759705 - 35759518
Alignment:
Q  32 gctcctttgaaagagcttgtgaaaaagctcaacacttcttcaccacatattccagttacttgcataattgctgatggatttttgggctttgctggaaaag 131  Q
    |||||||| ||||||||| | || ||||| || ||||| |||||||||||||||||||||||||| |||||||||||  |||| || |||||||||| ||    
T  35759705 gctcctttcaaagagcttctcaataagcttaatacttcatcaccacatattccagttacttgcattattgctgatggtctttttggttttgctggaagag 35759606  T
Q  132 tggcaaaggatttggggattcaagaactagtgttttggactgcttctgcttgtggcatgttgggatatttacagtacgatgagcttgt 219  Q
    | ||||  |||||||| ||||||||| ||  ||||||||||||||||||||||||  |  |||||||||| || || ||||| |||||    
T  35759605 tagcaagagatttgggcattcaagaaatacagttttggactgcttctgcttgtgggtttgtgggatatttgcattatgatgaacttgt 35759518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 490 - 567
Target Start/End: Complemental strand, 35775672 - 35775595
Alignment:
Q  490 acatgtatgtattttgatactcgatttagatcttttataaataatttaatatatatgcagcggtgtcaatgtcctttg 567  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35775672 acatgtatgtattttgatactcgatttagatcttttataaataatttaatatatatgcagtggtgtcaatgtcctttg 35775595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 32 - 249
Target Start/End: Complemental strand, 35869054 - 35868837
Alignment:
Q  32 gctcctttgaaagagcttgtgaaaaagctcaacacttcttcaccacatattccagttacttgcataattgctgatggatttttgggctttgctggaaaag 131  Q
    |||||||| |||||||||||||  |||||||||||||| ||||| ||||||||||||||||||||||||||||||||   ||  | ||||||||||| ||    
T  35869054 gctcctttcaaagagcttgtgattaagctcaacacttcatcacctcatattccagttacttgcataattgctgatggtaattatgactttgctggaagag 35868955  T
Q  132 tggcaaaggatttggggattcaagaactagtgttttggactgcttctgcttgtggcatgttgggatatttacagtacgatgagcttgttgagaggggaat 231  Q
    |||| || |||||||| |||| |||  ||    ||||||| |||||| |||||||  |  ||| |||||| || | ||| ||||||||  | || |||||    
T  35868954 tggctaaagatttgggcattcgagagatacaactttggacagcttctacttgtgggtttgtggcatatttgcaattcgaggagcttgtcaaaagaggaat 35868855  T
Q  232 tattcccttcaaaggtaa 249  Q
    | |||| |||||||||||    
T  35868854 tcttccattcaaaggtaa 35868837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0891 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: scaffold0891
Description:

Target: scaffold0891; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 157 - 387
Alignment:
Q  23 aactttcacgctcctttgaaagagcttgtgaaaaagctcaacacttcttcaccacatattccagttacttgcataattgctgatggatttttgggctttg 122  Q
    |||||| | |||||||||||||||||||| |||||  | ||| ||||  |||  ||| |||||||||||||||||||||| |||||| ||| | ||||||    
T  157 aacttttatgctcctttgaaagagcttgtcaaaaatttgaactcttcaacacaccattttccagttacttgcataattgccgatggaatttcgagctttg 256  T
Q  123 ctggaaaagtggcaaaggatttggggattcaagaactagtgttttggactgcttctgcttgtggcatgttgggatatttacagtacgatgagcttgttga 222  Q
    |||||| ||| ||||| ||||||||||||||||| |||||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||||||| |    
T  257 ctggaagagtagcaaaagatttggggattcaagagctagtgttttggactgcttcggcttctggcttgttgggatatttacaatacgatgagcttgttaa 356  T
Q  223 gaggggaattattcccttcaaaggtaagtta 253  Q
     ||||||||||||||||||||||||||||||    
T  357 caggggaattattcccttcaaaggtaagtta 387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0891; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 549
Target Start/End: Original strand, 2433 - 2491
Alignment:
Q  490 acatgtatgtattttgatactcgatttagatcttttataaataatttaatatatatgcag 549  Q
    ||||||| ||||||||||| || |||||||||| |||| ||||| |||||||||||||||    
T  2433 acatgtacgtattttgataatcaatttagatctcttat-aataaattaatatatatgcag 2491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 32 - 249
Target Start/End: Original strand, 136 - 353
Alignment:
Q  32 gctcctttgaaagagcttgtgaaaaagctcaacacttcttcaccacatattccagttacttgcataattgctgatggatttttgggctttgctggaaaag 131  Q
    |||||||| |||||||||||||  |||||||||||||| ||||| ||||||||||||||||||||||||||||||||   ||  | ||||||||||| ||    
T  136 gctcctttcaaagagcttgtgattaagctcaacacttcatcacctcatattccagttacttgcataattgctgatggtaattatgactttgctggaagag 235  T
Q  132 tggcaaaggatttggggattcaagaactagtgttttggactgcttctgcttgtggcatgttgggatatttacagtacgatgagcttgttgagaggggaat 231  Q
    |||| || |||||||| |||| |||  ||    ||||||| |||||| |||||||  |  ||| |||||| || | ||| ||||||||  | || |||||    
T  236 tggctaaagatttgggcattcgagagatacaactttggacagcttctacttgtgggtttgtggcatatttgcaattcgaggagcttgtcaaaagaggaat 335  T
Q  232 tattcccttcaaaggtaa 249  Q
    | |||| |||||||||||    
T  336 tcttccattcaaaggtaa 353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 249
Target Start/End: Original strand, 136 - 353
Alignment:
Q  32 gctcctttgaaagagcttgtgaaaaagctcaacacttcttcaccacatattccagttacttgcataattgctgatggatttttgggctttgctggaaaag 131  Q
    |||||||| ||||||||| | || ||||| ||||| || ||||| ||||||||||||||||||||||||||||||||   ||  | ||||||||||| ||    
T  136 gctcctttcaaagagcttataaataagctaaacacatcatcacctcatattccagttacttgcataattgctgatggtaattatgactttgctggaagag 235  T
Q  132 tggcaaaggatttggggattcaagaactagtgttttggactgcttctgcttgtggcatgttgggatatttacagtacgatgagcttgttgagaggggaat 231  Q
    |||| || |||||||| |||| |||  ||    ||||||| |||||| |||||||  |  ||| |||||| || | ||| ||||||||  | || |||||    
T  236 tggctaaagatttgggcattcgagagatacaactttggacagcttctacttgtgggtttgtggcatatttgcaattcgaggagcttgtcaaaagaggaat 335  T
Q  232 tattcccttcaaaggtaa 249  Q
    | |||| |||||||||||    
T  336 tcttccattcaaaggtaa 353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 492 - 569
Target Start/End: Complemental strand, 16426444 - 16426367
Alignment:
Q  492 atgtatgtattttgatactcgatttagatcttttataaataatttaatatatatgcagcggtgtcaatgtcctttgct 569  Q
    |||||||||||||||| ||  ||||| ||||||||||||||| |||||||||| | |||||||||| |||||| ||||    
T  16426444 atgtatgtattttgattcttaatttatatcttttataaataaattaatatataggtagcggtgtcagtgtcctatgct 16426367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 492 - 544
Target Start/End: Complemental strand, 3387667 - 3387615
Alignment:
Q  492 atgtatgtattttgatactcgatttagatcttttataaataatttaatatata 544  Q
    |||||||||||||||| ||| |||||||| |||||||||||| ||||||||||    
T  3387667 atgtatgtattttgattctcaatttagatattttataaataaattaatatata 3387615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 534
Target Start/End: Original strand, 30883156 - 30883197
Alignment:
Q  493 tgtatgtattttgatactcgatttagatcttttataaataat 534  Q
    ||||| ||||||||| ||||||||||||||||||| ||||||    
T  30883156 tgtatatattttgattctcgatttagatcttttatcaataat 30883197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 546
Target Start/End: Complemental strand, 35677792 - 35677736
Alignment:
Q  490 acatgtatgtattttgatactcgatttagatcttttataaataatttaatatatatg 546  Q
    |||||||| ||||||||| ||| ||| |||| |||||| ||||| ||||||||||||    
T  35677792 acatgtatatattttgattctcaattcagattttttatgaataaattaatatatatg 35677736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 492 - 555
Target Start/End: Complemental strand, 4112029 - 4111966
Alignment:
Q  492 atgtatgtattttgatactcgatttagatcttttataaataatttaatatatatgcagcggtgt 555  Q
    |||||||||||||||| ||| |||||||||||||||| |||| |||||||||| | ||||||||    
T  4112029 atgtatgtattttgattctcaatttagatcttttatatataaattaatatataagtagcggtgt 4111966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 513 - 556
Target Start/End: Original strand, 41815783 - 41815826
Alignment:
Q  513 atttagatcttttataaataatttaatatatatgcagcggtgtc 556  Q
    |||| |||||||||||||||| |||||||||||| |||||||||    
T  41815783 atttggatcttttataaataaattaatatatatgtagcggtgtc 41815826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 492 - 544
Target Start/End: Complemental strand, 209203 - 209151
Alignment:
Q  492 atgtatgtattttgatactcgatttagatcttttataaataatttaatatata 544  Q
    |||||||||||||||| ||| |||||||| |||||||||||| ||||||||||    
T  209203 atgtatgtattttgattctcaatttagatattttataaataaattaatatata 209151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 490 - 534
Target Start/End: Complemental strand, 35530077 - 35530033
Alignment:
Q  490 acatgtatgtattttgatactcgatttagatcttttataaataat 534  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||    
T  35530077 acatgtatatattttgattctcgatttagatcttttataaataat 35530033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 492 - 544
Target Start/End: Complemental strand, 41849031 - 41848979
Alignment:
Q  492 atgtatgtattttgatactcgatttagatcttttataaataatttaatatata 544  Q
    |||||||||||||||| ||| |||||||| |||||||||||| ||||||||||    
T  41849031 atgtatgtattttgattctcaatttagatattttataaataaattaatatata 41848979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 490 - 553
Target Start/End: Original strand, 16661325 - 16661388
Alignment:
Q  490 acatgtatgtattttgatactcgatttagatcttttataaataatttaatatatatgcagcggt 553  Q
    ||||||||||||| |||| ||| |||||||||||||||| || | |||||||||||| ||||||    
T  16661325 acatgtatgtattctgattctcaatttagatcttttatacatgaattaatatatatgtagcggt 16661388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 492 - 544
Target Start/End: Original strand, 38783760 - 38783812
Alignment:
Q  492 atgtatgtattttgatactcgatttagatcttttataaataatttaatatata 544  Q
    |||||||||||||||| ||| ||| |||| |||||||||||| ||||||||||    
T  38783760 atgtatgtattttgattctcaattcagatattttataaataaattaatatata 38783812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 557
Target Start/End: Complemental strand, 17651271 - 17651206
Alignment:
Q  492 atgtatgtattttgatactcgatttagatcttttataaataatttaatatatatgcagcggtgtca 557  Q
    |||||||||||||| |  |  ||||||||||| ||||||||| ||||||||||  |||||||||||    
T  17651271 atgtatgtattttggtttttaatttagatcttatataaataaattaatatatagccagcggtgtca 17651206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 564
Target Start/End: Original strand, 44650139 - 44650180
Alignment:
Q  523 tttataaataatttaatatatatgcagcggtgtcaatgtcct 564  Q
    ||||||||||| |||||||||||| ||| |||||||||||||    
T  44650139 tttataaataaattaatatatatgtagcagtgtcaatgtcct 44650180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 26576477 - 26576433
Alignment:
Q  284 tatgaagcacggacacatctatgactagacttgttgcggtgtccg 328  Q
    |||||||||||||||| |||| |||||||| ||| ||||||||||    
T  26576477 tatgaagcacggacacctctaggactagacgtgtcgcggtgtccg 26576433  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 492 - 543
Target Start/End: Complemental strand, 13097456 - 13097405
Alignment:
Q  492 atgtatgtattttgatactcgatttagatcttttataaataatttaatatat 543  Q
    |||||||||||||||| ||| |||||||| |||||||||||| |||||||||    
T  13097456 atgtatgtattttgattctcaatttagatattttataaataaattaatatat 13097405  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 492 - 544
Target Start/End: Complemental strand, 28869863 - 28869811
Alignment:
Q  492 atgtatgtattttgatactcgatttagatcttttataaataatttaatatata 544  Q
    |||||||||||||||| ||| ||||| || |||||||||||| ||||||||||    
T  28869863 atgtatgtattttgattctcaatttaaatattttataaataaattaatatata 28869811  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 544
Target Start/End: Complemental strand, 28867297 - 28867248
Alignment:
Q  495 tatgtattttgatactcgatttagatcttttataaataatttaatatata 544  Q
    ||||||||||||| ||| ||||| || |||||||||||| ||||||||||    
T  28867297 tatgtattttgattctcaatttaaatgttttataaataaattaatatata 28867248  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 544
Target Start/End: Original strand, 18393701 - 18393753
Alignment:
Q  492 atgtatgtattttgatactcgatttagatcttttataaataatttaatatata 544  Q
    ||||||||||| |||| ||| |||||||| |||||||| ||| ||||||||||    
T  18393701 atgtatgtattatgattctcaatttagatattttataagtaaattaatatata 18393753  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 557
Target Start/End: Original strand, 9730060 - 9730122
Alignment:
Q  495 tatgtattttgatactcgatttagatcttttataaataatttaatatatatgcagcggtgtca 557  Q
    ||||||||||| | ||  ||||||||||||||||||||| |||||||||| | ||||||||||    
T  9730060 tatgtattttggttcttaatttagatcttttataaataaattaatatataggtagcggtgtca 9730122  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 534
Target Start/End: Original strand, 43837341 - 43837382
Alignment:
Q  493 tgtatgtattttgatactcgatttagatcttttataaataat 534  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||    
T  43837341 tgtatatattttgattctcaatttagatcttttataaataat 43837382  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 492 - 544
Target Start/End: Complemental strand, 2602102 - 2602050
Alignment:
Q  492 atgtatgtattttgatactcgatttagatcttttataaataatttaatatata 544  Q
    |||| ||||||||||| ||  ||||||||||||||||||||| ||||||||||    
T  2602102 atgtttgtattttgattcttaatttagatcttttataaataaattaatatata 2602050  T

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Target: scaffold1723 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 544
Target Start/End: Original strand, 489 - 538
Alignment:
Q  495 tatgtattttgatactcgatttagatcttttataaataatttaatatata 544  Q
    ||||||||||||| ||  ||| ||||||||||||||||| ||||||||||    
T  489 tatgtattttgattcttaattaagatcttttataaataaattaatatata 538  T

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