View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13772_low_8 (Length: 410)
Name: NF13772_low_8
Description: NF13772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13772_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 29144776 - 29145174
Alignment:
| Q |
1 |
actgctccatgttcttcttctcagctacctattgaccccaagaagaaaaccannnnnnnnnnnnnnnnnnncaagccaattggacagaacatgaaaaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29144776 |
actgctccatgttcttcttctcagctacctattgaccccaagaagaaaaccacttcttcttcttcttcttccaagccaattggacagaacatgaaaaatg |
29144875 |
T |
|
| Q |
101 |
gagctaaagtttatgagcaaaagaagaaaagcacagaggaaaatgtcactaacagttactcttctaagacaattgattccattctgaaaaggagattggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29144876 |
gagctaaagtttatgagcaaaagaagaaaagcacagaggaaaatgtcactaacagttactcttctaagacgattgattccattctgaaaaggagattggt |
29144975 |
T |
|
| Q |
201 |
taagccaaattctgactcaattactccacatggttcaactagatctttgctcagcgacacaacttttttagatggctcttcagattatgattctagcttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29144976 |
taagccaaattctgactcaattactccacatggttcaactagatctttgctcagcgacacaacttttttagatggctcttcagattatgattctagcttg |
29145075 |
T |
|
| Q |
301 |
gtattaactaaggttgatgataaaaaggatcaagttgttggtcaaaatgaagccaaccctgcatcgaaatcgagttcctcaagccaggttagttttctt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
29145076 |
gtattaactaaggttgatgataaaaaggatcaagttgttggtcaaaatgaagccaaccctgcatcgaaatcgggctcctcaagccaggttagttttctt |
29145174 |
T |
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