View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13772_low_9 (Length: 375)
Name: NF13772_low_9
Description: NF13772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13772_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 29066256 - 29066615
Alignment:
| Q |
19 |
atgacatacatgttagaaagggagaaggaaaactggaacttcttggcaaaagtacactatgtgaaacatc---------tcagttaagagtaagagtgag |
109 |
Q |
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| T |
29066256 |
atgacatacatgttagaaagggagaaggaaaattggaacttcttggcaaaagtacactatgtgaaacatcagccatatctcagttaagagtaagagtgag |
29066355 |
T |
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| Q |
110 |
gcgtgaaacttgtgggaaagggtttgtgccatataaaaggtgcatgtcgaaaaatgaaaaccagtcttcatctgcaacagctgatgaaagataagagaaa |
209 |
Q |
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| T |
29066356 |
gcgtgaaacttgtgggaaagggtttgtgccatataaaaggtgcatgtcgaaaaatgaaaaccagtcttcatctgcaacagctgatgaaagataagagaaa |
29066455 |
T |
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| Q |
210 |
a-cttcaccttttactatatttttctcttttgagatagactagttgtgtttttcgtaactcttgattgatatcacggtgacaaccgcactttaggagcga |
308 |
Q |
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| T |
29066456 |
aacttcacctttcactatatttttctcttttgagatagactagctgtgtttttcgtaactcttgattgatatcacggtgacaaccgcactttaggagcga |
29066555 |
T |
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| Q |
309 |
agctccaatctgttgcttgggataaaaacaacggcgaagacgcgagaaacgcctatgcta |
368 |
Q |
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| T |
29066556 |
agctccaatctgttgcttgggataaaaacaacggtgaagacgcgagaaacgcctatgcta |
29066615 |
T |
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