View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13773_high_1 (Length: 1023)

Name: NF13773_high_1
Description: NF13773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13773_high_1
NF13773_high_1
[»] chr7 (14 HSPs)
chr7 (588-1023)||(2609566-2610001)
chr7 (54-448)||(2609075-2609469)
chr7 (617-782)||(15569525-15569690)
chr7 (30-189)||(2575209-2575364)
chr7 (620-762)||(15169914-15170056)
chr7 (596-757)||(13815722-13815883)
chr7 (593-738)||(32352398-32352543)
chr7 (897-971)||(42451300-42451372)
chr7 (979-1023)||(42451401-42451445)
chr7 (16-56)||(2606784-2606824)
chr7 (666-746)||(31206669-31206749)
chr7 (509-543)||(2609530-2609564)
chr7 (622-746)||(31210073-31210198)
chr7 (616-696)||(22301143-22301224)
[»] chr3 (8 HSPs)
chr3 (596-791)||(2353146-2353341)
chr3 (578-746)||(19929990-19930157)
chr3 (604-774)||(9372192-9372362)
chr3 (578-702)||(42253516-42253640)
chr3 (596-757)||(26445066-26445227)
chr3 (686-778)||(14654836-14654928)
chr3 (647-741)||(14658129-14658223)
chr3 (578-680)||(19935191-19935291)
[»] chr4 (10 HSPs)
chr4 (509-738)||(13250408-13250640)
chr4 (526-742)||(13010430-13010651)
chr4 (593-746)||(11914032-11914184)
chr4 (621-746)||(31767445-31767570)
chr4 (688-846)||(26947706-26947863)
chr4 (592-767)||(4747164-4747336)
chr4 (596-757)||(895427-895588)
chr4 (593-738)||(43287851-43287997)
chr4 (621-746)||(44643447-44643572)
chr4 (622-698)||(6667717-6667794)
[»] chr6 (10 HSPs)
chr6 (603-835)||(2936127-2936359)
chr6 (666-856)||(3835702-3835890)
chr6 (647-781)||(14579579-14579713)
chr6 (596-702)||(24044905-24045011)
chr6 (697-757)||(19973665-19973725)
chr6 (596-711)||(24041602-24041717)
chr6 (692-749)||(19976091-19976148)
chr6 (666-748)||(19697888-19697970)
chr6 (621-698)||(6591846-6591924)
chr6 (619-679)||(19973730-19973790)
[»] chr5 (5 HSPs)
chr5 (623-774)||(13291919-13292071)
chr5 (616-719)||(26703009-26703113)
chr5 (616-719)||(26972742-26972846)
chr5 (616-748)||(18594807-18594940)
chr5 (596-720)||(39292120-39292244)
[»] chr8 (9 HSPs)
chr8 (858-972)||(12896070-12896184)
chr8 (542-748)||(38678679-38678886)
chr8 (30-166)||(11084587-11084721)
chr8 (558-651)||(38676904-38677000)
chr8 (619-677)||(41739878-41739936)
chr8 (617-682)||(33940435-33940500)
chr8 (622-748)||(1788897-1789024)
chr8 (617-696)||(4977382-4977461)
chr8 (621-748)||(39655696-39655824)
[»] chr1 (10 HSPs)
chr1 (575-748)||(38825429-38825602)
chr1 (575-748)||(38828639-38828812)
chr1 (620-746)||(43254110-43254236)
chr1 (30-117)||(22203591-22203679)
chr1 (596-726)||(9111513-9111643)
chr1 (617-742)||(39197211-39197337)
chr1 (596-717)||(49387578-49387699)
chr1 (616-724)||(21501242-21501350)
chr1 (658-748)||(1953680-1953770)
chr1 (621-697)||(12141649-12141726)
[»] scaffold0028 (2 HSPs)
scaffold0028 (596-746)||(110116-110266)
scaffold0028 (616-746)||(127695-127825)
[»] scaffold0076 (1 HSPs)
scaffold0076 (596-774)||(6732-6908)
[»] scaffold0216 (1 HSPs)
scaffold0216 (666-757)||(12097-12188)
[»] scaffold0293 (1 HSPs)
scaffold0293 (649-721)||(4950-5022)
[»] scaffold0002 (1 HSPs)
scaffold0002 (658-757)||(448705-448801)
[»] chr2 (6 HSPs)
chr2 (593-748)||(2590493-2590649)
chr2 (616-717)||(27083082-27083183)
chr2 (596-698)||(21189444-21189548)
chr2 (607-684)||(10941409-10941485)
chr2 (607-684)||(10947278-10947354)
chr2 (677-757)||(27107287-27107367)
[»] scaffold0014 (1 HSPs)
scaffold0014 (624-698)||(82664-82739)


Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 588 - 1023
Target Start/End: Original strand, 2609566 - 2610001
Alignment:
Q  588 aaattatgacctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgca 687  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2609566 aaatcatgacctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtatttatctgtctcataagcgcatatcctcgca 2609665  T
Q  688 ggatacaacaggttcctctctgatatgaatcatatcagatgtgacagaacaactcgaatttgttaaacacgggaatgatgtaacccaagaactcaatggc 787  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2609666 ggatacaacatgttcttctctgatatgaatcatatcagatgtgacagaacaactcgaatttgttaaacacgggaatgatgtaactcaagaactcaatggc 2609765  T
Q  788 attgaaaggagagtaagatattttttctggtttgatagtgtataaaaatgtttatgtttcaatattgatcagtgacagaaccaggaatttttagtagtgg 887  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2609766 attgaaaggagagtaagatattttttctggtttgatagtgtacaaaaatgtttatgtttcaatattgatcagtgacagatccaggaatttttagtagtgg 2609865  T
Q  888 gggcagtatatatacaaacttttaccatgaaacatatataatattttatttctgaaagcataaattatacattgtaaacattaatatcgataaaaatata 987  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2609866 gggcagtatatatacaaacttttaccatgaaacatatataatattttatttctgaaagcataaattatacattgtaaacattaatatcgataaaaatata 2609965  T
Q  988 tctttatgtataagtagctaaataataaataatgac 1023  Q
    |||||||| ||||||| |||||||||||||||||||    
T  2609966 tctttatgcataagtaactaaataataaataatgac 2610001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 54 - 448
Target Start/End: Original strand, 2609075 - 2609469
Alignment:
Q  54 tacttctttggcagcaaaagcagtagcacctcctgtataaagataaagatataaatagaaccataaaaaagttccatccattatttttatcagtggaaaa 153  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2609075 tacttctttggcagcaaaagcagtagcaccttctgtataaagataaagatagaaatagaaccataaaaatgttccatccattatttttatcagtggaaaa 2609174  T
Q  154 gtaaataagcaacttataataaagagtttatgaatactatatttactttgaattcaagtcattttgcaatcaaaacatggagattggaaaattccattgt 253  Q
    ||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2609175 gtaaataagcaacttataataaagagtttatgaatacaacatatactttgaattcaagtcattttgcaatcaaaacatggagattggacaattccattgt 2609274  T
Q  254 tttaacaaatgtaaccttgtaaattttataactattattcttttcacatatgtcgctctagcaatagtaatgtttatattaaaactaagagccgtcggaa 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2609275 tttaacaaatgtaaccttgtaaattttataactattattcttttcacatatgtcgctctagcaatagtaatgtttatattaaaactaagagccgtcggaa 2609374  T
Q  354 tggctctgctaggatttggcaaagtttggtgaatcattaaaacaattagcttaccatcctttacatcactcacgttttctgttgtgaaaattaag 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2609375 tggctctgctaggatttggcaaagtttggtgaatcattaaaacaattagcttgccatcctttacatcactcacgttttctgttgtgaaaattaag 2609469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 617 - 782
Target Start/End: Complemental strand, 15569690 - 15569525
Alignment:
Q  617 tatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatgaa 716  Q
    |||||||||||||||||||| |||||||| |||||| | | ||||| | ||||||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  15569690 tatataacctgaggcgtgacaaagtcactgtccttagggatttatccgcctcataagcacatatcctcccaggatacaacaggttcttctctgatatgaa 15569591  T
Q  717 tcatatcagatgtgacagaacaactcgaatttgttaaacacgggaatgatgtaacccaagaactca 782  Q
    |||||||||| ||||||||||||||||||| |||||||||| | ||||||||||||||| ||||||    
T  15569590 tcatatcagaggtgacagaacaactcgaatctgttaaacactgaaatgatgtaacccaaaaactca 15569525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 30 - 189
Target Start/End: Original strand, 2575209 - 2575364
Alignment:
Q  30 taaaccactgaacacattgccaagtacttctttggcagcaaaagcagtagcacctcctgtataaagataaagatataaatagaaccataaaaaagttcca 129  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||||||||||||| |||||||||||| ||||  |||||    
T  2575209 taaaccagtgaacacattgccaagtacttatttggaagcaaaagcaatagcaactcctgtataaagataaagatagaaatagaaccatgaaaattttcca 2575308  T
Q  130 tccattatttttatcagtggaaaagtaaataagcaacttataataaagagtttatgaata 189  Q
    ||| |||||||||||| |  | |||||| |||||||||  ||||||| ||||||||||||    
T  2575309 tcccttatttttatcaat--agaagtaattaagcaact--taataaaaagtttatgaata 2575364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 620 - 762
Target Start/End: Complemental strand, 15170056 - 15169914
Alignment:
Q  620 ataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatgaatca 719  Q
    |||||||||| ||||| ||||||||| |||||||  | ||||| | ||||||| ||||||||||| ||||||||||||||||| ||||| | ||||||||    
T  15170056 ataacctgagacgtgatgaagtcactgtccttaaaaatttatcagcctcataaacgcatatcctcacaggatacaacaggttcttctctaacatgaatca 15169957  T
Q  720 tatcagatgtgacagaacaactcgaatttgttaaacacgggaa 762  Q
    | |||||  ||||||||||||| ||||||| ||| ||| ||||    
T  15169956 tgtcagagatgacagaacaacttgaatttgataatcactggaa 15169914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 596 - 757
Target Start/End: Complemental strand, 13815883 - 13815722
Alignment:
Q  596 acctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgcaggatacaa 695  Q
    |||||| ||| ||||| || ||||||||| ||||||||||| |||||||| |||||||| | ||||  | |||||||||||||||| || ||||||||||    
T  13815883 acctgccaaacagtaatccattatataacatgaggcgtgacaaagtcactgtccttaaggatttattcgcctcataagcgcatatcttcccaggatacaa 13815784  T
Q  696 caggttcctctctgatatgaatcatatcagatgtgacagaacaactcgaatttgttaaacac 757  Q
    || |||| || || || ||||||| |||||| ||||||||||| || |||| || |||||||    
T  13815783 catgttcttccctaatgtgaatcacatcagaggtgacagaacagcttgaatctgataaacac 13815722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 593 - 738
Target Start/End: Original strand, 32352398 - 32352543
Alignment:
Q  593 atgacctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgcaggata 692  Q
    |||||||||| | |||||| || ||  |||||  |||||||||| |||||||| |||||||| | ||||  | ||||||||||||||||||| ||||| |    
T  32352398 atgacctgcacactagtaaaccgttgaataacacgaggcgtgacaaagtcactgtccttaaggatttattcgcctcataagcgcatatcctcccaggaca 32352497  T
Q  693 caacaggttcctctctgatatgaatcatatcagatgtgacagaaca 738  Q
    |||||  ||| |||| ||||||||||| |||||| |||||||||||    
T  32352498 caacatattcttctcagatatgaatcacatcagaggtgacagaaca 32352543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 897 - 971
Target Start/End: Original strand, 42451300 - 42451372
Alignment:
Q  897 atatacaaacttttaccatgaaacatatataatattttatttctgaaagcataaattatacattgtaaacattaa 971  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||  | ||||||||| ||||||    
T  42451300 atatacaaaattttaccatgaaacatatataatattttatttcttaaagcataaa--agacattgtaagcattaa 42451372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 979 - 1023
Target Start/End: Original strand, 42451401 - 42451445
Alignment:
Q  979 aaaaatatatctttatgtataagtagctaaataataaataatgac 1023  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  42451401 aaaaatatatctttatatataagtagctaaataataaataatgac 42451445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 2606784 - 2606824
Alignment:
Q  16 gaaatttgattgattaaaccactgaacacattgccaagtac 56  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  2606784 gaaatttgattgattaaaccactaaacacattgccaagtac 2606824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 666 - 746
Target Start/End: Original strand, 31206669 - 31206749
Alignment:
Q  666 ctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatgaatcatatc-agatgtgacagaacaactcgaat 746  Q
    |||||||||||||||||| ||||||||||||| |||| || | | ||||||||||| |  || |||||||||||||||||||    
T  31206669 ctcataagcgcatatcctggcaggatacaaca-gttcttccccgttatgaatcataactggaggtgacagaacaactcgaat 31206749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 509 - 543
Target Start/End: Original strand, 2609530 - 2609564
Alignment:
Q  509 ggtaaaagagaaaacaataaacttatcttcttcaa 543  Q
    ||||||||||| |||||||||||||||||||||||    
T  2609530 ggtaaaagagagaacaataaacttatcttcttcaa 2609564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 622 - 746
Target Start/End: Original strand, 31210073 - 31210198
Alignment:
Q  622 aacctgaggcgtgacgaagtcactatccttaagtactt-atctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatgaatcat 720  Q
    |||||||||||||||  ||||||| ||||| || | || ||| | |||||||| |||||||||| | || |||||||| ||| || | | ||||||||||    
T  31210073 aacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagtgcatatcctcccggggtacaacag-ttcttccccgttatgaatcat 31210171  T
Q  721 a-tcagatgtgacagaacaactcgaat 746  Q
    | || || |||||||||||||||||||    
T  31210172 aatcggaggtgacagaacaactcgaat 31210198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 616 - 696
Target Start/End: Original strand, 22301143 - 22301224
Alignment:
Q  616 ttatataacctgaggcgtgacgaagtcactatccttaagtactt-atctgtctcataagcgcatatcctcgcaggatacaac 696  Q
    |||| ||||||||||||||||  ||||||| ||||| || | || ||| | ||||||||||||||||||| || ||||||||    
T  22301143 ttatgtaacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaagatacaac 22301224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 6e-49; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 596 - 791
Target Start/End: Complemental strand, 2353341 - 2353146
Alignment:
Q  596 acctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgcaggatacaa 695  Q
    |||||||||||| ||| || |||||||||||||||| ||| ||||||| | |||||||| | ||||| | |||||||| || ||||||| ||||||||||    
T  2353341 acctgcaaaataataaaccgttatataacctgaggcatgatgaagtcattgtccttaaggatttatccgcctcataagtgcttatcctcccaggatacaa 2353242  T
Q  696 caggttcctctctgatatgaatcatatcagatgtgacagaacaactcgaatttgttaaacacgggaatgatgtaacccaagaactcaatggcattg 791  Q
    ||||||| ||||||||||||||||||| ||| |||||||||||||| ||||||| ||||||  | |||||| ||||||||||||||||||| ||||    
T  2353241 caggttcttctctgatatgaatcatataagaggtgacagaacaacttgaatttgataaacattgaaatgatttaacccaagaactcaatggtattg 2353146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 578 - 746
Target Start/End: Original strand, 19929990 - 19930157
Alignment:
Q  578 aacaaacaaaaaattatgacctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgca 677  Q
    ||||||||| |||| ||||||||||||||||||| || ||||||||| ||||||||||| |||||||  |||||||| | ||||| | ||||||||||||    
T  19929990 aacaaacaagaaatcatgacctgcaaaatagtaaaccgttatataacatgaggcgtgacaaagtcaccgtccttaaggatttatccgcctcataagcgca 19930089  T
Q  678 tatcctcgcaggatacaacaggttcctctctgatatgaatcatatcagatgtgacagaacaactcgaat 746  Q
    ||||||| || ||||||||| |||| || |||| |||||||| |||||| |||| ||||||||| ||||    
T  19930090 tatcctccca-gatacaacatgttcttccctgagatgaatcacatcagaggtgatagaacaacttgaat 19930157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 604 - 774
Target Start/End: Original strand, 9372192 - 9372362
Alignment:
Q  604 aatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgcaggatacaacaggttcc 703  Q
    |||||||| || ||| |||||||||||| ||||||||||||| |||||||| | ||||  | |||||||||||||||| || |||||||||||||||||     
T  9372192 aatagtaaaccgttaaataacctgaggcatgacgaagtcactgtccttaaggatttattcgcctcataagcgcatatcgtcccaggatacaacaggttca 9372291  T
Q  704 tctctgatatgaatcatatcagatgtgacagaacaactcgaatttgttaaacacgggaatgatgtaaccca 774  Q
    || |||||||||||||||| ||| |||||| | |||||  |||||| |||||||  || ||||||||||||    
T  9372292 tccctgatatgaatcatatgagaggtgacaaagcaacttaaatttgataaacacatgactgatgtaaccca 9372362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 578 - 702
Target Start/End: Original strand, 42253516 - 42253640
Alignment:
Q  578 aacaaacaaaaaattatgacctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgca 677  Q
    ||||||||| |||| ||||||||||||||||||| || ||||||||| ||||||||||| |||||||| |||||||| | ||| | | ||||||||||||    
T  42253516 aacaaacaagaaatcatgacctgcaaaatagtaaaccgttatataacatgaggcgtgacaaagtcactgtccttaaggatttacccgcctcataagcgca 42253615  T
Q  678 tatcctcgcaggatacaacaggttc 702  Q
    |||||||  ||||||||||| ||||    
T  42253616 tatcctccaaggatacaacatgttc 42253640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 596 - 757
Target Start/End: Original strand, 26445066 - 26445227
Alignment:
Q  596 acctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgcaggatacaa 695  Q
    |||||||||||| ||| |   |||||||| |||||| |||| |||||||| |||||||| | ||||| | ||||||| || |||||||  || |||||||    
T  26445066 acctgcaaaataataaacggatatataacatgaggcatgacaaagtcactgtccttaaggatttatccgcctcataatcgtatatcctgtcaagatacaa 26445165  T
Q  696 caggttcctctctgatatgaatcatatcagatgtgacagaacaactcgaatttgttaaacac 757  Q
    || |||| || |||||||||||||||||||| | |||| ||||| | ||||||| |||||||    
T  26445166 catgttcttccctgatatgaatcatatcagaggcgacataacaatttgaatttgctaaacac 26445227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 686 - 778
Target Start/End: Complemental strand, 14654928 - 14654836
Alignment:
Q  686 caggatacaacaggttcctctctgatatgaatcatatcagatgtgacagaacaactcgaatttgttaaacacgggaatgatgtaacccaagaa 778  Q
    ||||||||||||||||| ||||||| ||||||||| ||||| |||||||||||||| ||| ||| ||| ||| |||| |||||||||||||||    
T  14654928 caggatacaacaggttcttctctgacatgaatcatgtcagaggtgacagaacaacttgaagttgataatcacaggaaagatgtaacccaagaa 14654836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 647 - 741
Target Start/End: Complemental strand, 14658223 - 14658129
Alignment:
Q  647 tccttaagtacttatctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatgaatcatatcagatgtgacagaacaact 741  Q
    |||||||| | |||||||  |||||||||||||||||  ||||||||||||  ||| ||||| | ||||||||| ||||| ||||||||||||||    
T  14658223 tccttaaggatttatctgcatcataagcgcatatccttccaggatacaacaaattcttctctaacatgaatcatgtcagaggtgacagaacaact 14658129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 578 - 680
Target Start/End: Original strand, 19935191 - 19935291
Alignment:
Q  578 aacaaacaaaaaattatgacctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgca 677  Q
    ||||||||| |||| ||||| ||||||||||||| || |||||  |  ||||||||||| |||||||| |||||||| | |||||   ||||||||||||    
T  19935191 aacaaacaagaaatcatgacgtgcaaaatagtaaaccgttataata--tgaggcgtgacaaagtcactgtccttaaggatttatcctcctcataagcgca 19935288  T
Q  678 tat 680  Q
    |||    
T  19935289 tat 19935291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 509 - 738
Target Start/End: Original strand, 13250408 - 13250640
Alignment:
Q  509 ggtaaaagagaaaacaataaacttatct--tcttcaaattgcggtaatttgaagtcagttacggcgaagtaaacaaacaaaaaattatgacctgcaaaat 606  Q
    ||||||||||| |||||||||||||| |  |||| |||||||||| ||||||  ||  | |||| |||||||||||||||||||| ||||||||||||||    
T  13250408 ggtaaaagagagaacaataaacttatatgttcttaaaattgcggtgatttgacatcgataacggtgaagtaaacaaacaaaaaatcatgacctgcaaaat 13250507  T
Q  607 agtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcc-tcgcaggatacaacaggttcctc 705  Q
    |||||||| ||||||||| ||||||||||| |||||||| |||||||  | |||||   ||||||||||||||||| ||  ||||||||| | |||| ||    
T  13250508 agtaagccgttatataacatgaggcgtgacaaagtcactctccttaaagatttatccacctcataagcgcatatccttcttaggatacaatatgttcttc 13250607  T
Q  706 tctgatatgaatcatatcagatgtgacagaaca 738  Q
     ||||||||||||| |||||  |||||||||||    
T  13250608 cctgatatgaatcacatcagtggtgacagaaca 13250640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 526 - 742
Target Start/End: Original strand, 13010430 - 13010651
Alignment:
Q  526 taaacttatct--tcttcaaattgcggtaatttgaagtcagttacggcgaagtaaacaaacaaaaaattatgacctgcaaaatagtaagcc---tttata 620  Q
    |||||||||||  |||| |||||||||| |||||||||| || |||| ||||||| ||||||| || | ||||||||||| ||||||||||   ||||||    
T  13010430 taaacttatctgttcttgaaattgcggtgatttgaagtcggtaacggtgaagtaagcaaacaagaattcatgacctgcaacatagtaagccacatttata 13010529  T
Q  621 taacctgaggcgtgacgaagtcactatccttaagta-cttatctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatgaatca 719  Q
    ||||||||||||||||  ||||||| ||||| || |  ||||| | |||||||||||||||||||  |||||| |||| |||| |||| | || ||||||    
T  13010530 taacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcctaggatataaca-gttcttctccgttacgaatca 13010628  T
Q  720 tatcagatgtgacagaacaactc 742  Q
    || | ||||||||||||||||||    
T  13010629 taacggatgtgacagaacaactc 13010651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 593 - 746
Target Start/End: Original strand, 11914032 - 11914184
Alignment:
Q  593 atgacctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgcaggata 692  Q
    ||||||| ||||||||| | || ||| ||||||| |||||||||||||||| |||||||||| | ||||| |||||||||| |||||||||| ||  |||    
T  11914032 atgacctacaaaatagtcaaccgttaaataacctaaggcgtgacgaagtcattatccttaaggatttatccgtctcataagtgcatatcctccca-aata 11914130  T
Q  693 caacaggttcctctctgatatgaatcatatcagatgtgacagaacaactcgaat 746  Q
    |||||| ||| |||| | |||||||||||  ||| ||||||||||| |||||||    
T  11914131 caacagattcttctccggtatgaatcatactagaggtgacagaacagctcgaat 11914184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 621 - 746
Target Start/End: Original strand, 31767445 - 31767570
Alignment:
Q  621 taacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatgaatcat 720  Q
    |||| ||||||||||| || |||||||||||||| | ||||| | ||||||||| |||||||||  ||||||||||| |||| || |||||||||||||     
T  31767445 taacatgaggcgtgacaaaatcactatccttaaggatttatccgcctcataagcacatatcctcctaggatacaacatgttcttccctgatatgaatcac 31767544  T
Q  721 atcagatgtgacagaacaactcgaat 746  Q
    |||||| |||||||||||||| ||||    
T  31767545 atcagaggtgacagaacaacttgaat 31767570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 688 - 846
Target Start/End: Complemental strand, 26947863 - 26947706
Alignment:
Q  688 ggatacaacaggttcctctctgatatgaatcatatcagatgtgacagaacaactcgaatttgttaaa-cacgggaatgatgtaacccaagaactcaatgg 786  Q
    |||||||||| |||| |||||||   |||| | ||||||  |||||||||| ||||||| ||||||| ||| |||| ||||||||||||||| |||||||    
T  26947863 ggatacaacatgttcttctctgaa--gaattacatcagagatgacagaacagctcgaatatgttaaaacactggaacgatgtaacccaagaattcaatgg 26947766  T
Q  787 cattgaaaggagagtaagatattttttctggtttgatagtgtataaaaatgtttatgttt 846  Q
     ||||||| ||||||||| |||| |||||||||| |||||||| ||||||| || |||||    
T  26947765 tattgaaaagagagtaagttattatttctggttttatagtgtacaaaaatggttctgttt 26947706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 592 - 767
Target Start/End: Complemental strand, 4747336 - 4747164
Alignment:
Q  592 tatgacctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgcaggat 691  Q
    |||||||||||||| ||||| || ||| |||| ||||||||||||||||||||| || ||||| | | ||    |||||||||| |||||||| || |||    
T  4747336 tatgacctgcaaaacagtaaaccattaaataatctgaggcgtgacgaagtcactgtc-ttaaggattcatggacctcataagcgtatatcctcccaagat 4747238  T
Q  692 acaacaggttcctctctgatatgaatcatatcagatgtgacagaacaactcgaatttgttaaacacgggaatgatg 767  Q
    ||||||||||| || ||  |||||||||||||||  |||||||||||||| |||| |  |||||||  ||||||||    
T  4747237 acaacaggttcttcgcttgtatgaatcatatcag--gtgacagaacaacttgaatctcataaacacatgaatgatg 4747164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 596 - 757
Target Start/End: Complemental strand, 895588 - 895427
Alignment:
Q  596 acctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtactt-atctgtctcataagcgcatatcctcgcaggataca 694  Q
    |||||||||||||||| |  |||| ||||||||| ||||||  ||||||| ||||| || | || ||| | ||||||||||||||||||| |||||||||    
T  895588 acctgcaaaatagtaaactgttatctaacctgagtcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggataca 895489  T
Q  695 acaggttcctctctgatatgaatcatatcagatgtgacagaacaactcgaatttgttaaacac 757  Q
    | | |||| || || ||||||||||||||||| |||| ||||||| | ||||||  |||||||    
T  895488 a-aagttcttccctaatatgaatcatatcagaggtgatagaacaagttgaatttaataaacac 895427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 593 - 738
Target Start/End: Complemental strand, 43287997 - 43287851
Alignment:
Q  593 atgacctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaa-gtacttatctgtctcataagcgcatatcctcgcaggat 691  Q
    ||||| |||| |||||||| || ||  ||||| ||||||||||| |||||||| ||||||| | | ||||  | |||||||||||||||| |  ||||||    
T  43287997 atgacatgcacaatagtaaaccgttgaataacatgaggcgtgacaaagtcactgtccttaaaggatttattcgcctcataagcgcatatctttccaggat 43287898  T
Q  692 acaacaggttcctctctgatatgaatcatatcagatgtgacagaaca 738  Q
    ||||||  ||| |||| ||||||||||| |||||| |||||||||||    
T  43287897 acaacatattcttctcagatatgaatcacatcagaggtgacagaaca 43287851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 621 - 746
Target Start/End: Complemental strand, 44643572 - 44643447
Alignment:
Q  621 taacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatgaatcat 720  Q
    ||||||||||||||||  ||||||| ||||| ||    |||| | |||||||||||||||||||  ||||||||||| |||| || | ||||||||||||    
T  44643572 taacctgaggcgtgacatagtcactgtccttcagattctatccgcctcataagcgcatatcctcctaggatacaaca-gttcttccccgatatgaatcat 44643474  T
Q  721 -atcagatgtgacagaacaactcgaat 746  Q
     | ||||  ||||||||||||||||||    
T  44643473 aaccagagatgacagaacaactcgaat 44643447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 622 - 698
Target Start/End: Original strand, 6667717 - 6667794
Alignment:
Q  622 aacctgaggcgtgacgaagtcactatccttaagtactt-atctgtctcataagcgcatatcctcgcaggatacaacag 698  Q
    |||||||||||||||  ||||||| | ||| || | || ||| | ||||||||||||||||||| |||||||||||||    
T  6667717 aacctgaggcgtgacatagtcactgttcttgaggattttatccgcctcataagcgcatatcctcccaggatacaacag 6667794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 9e-45; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 603 - 835
Target Start/End: Original strand, 2936127 - 2936359
Alignment:
Q  603 aaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgcaggatacaacaggttc 702  Q
    ||||||||| || ||||||||| ||||| |||||||||||||| |||||||| | ||||| | |||||||||||||||| |  || ||||| ||| ||||    
T  2936127 aaatagtaaaccgttatataacatgaggtgtgacgaagtcactgtccttaaggatttatccgcctcataagcgcatatcttttcaagataccacatgttc 2936226  T
Q  703 ctctctgatatgaatcatatcagatgtgacagaacaactcgaatttgttaaacacgggaatgatgtaacccaagaactcaatggcattgaaaggagagta 802  Q
     |||||||||| ||||| |||||| ||||||||||| ||||||| | ||||||||  || |||||| ||||||||||||||||| |||||||||||||||    
T  2936227 ttctctgatataaatcacatcagaggtgacagaacagctcgaatatattaaacactagagtgatgttacccaagaactcaatggtattgaaaggagagta 2936326  T
Q  803 agatattttttctggtttgatagtgtataaaaa 835  Q
    |  |||| ||| || |||  | |||||||||||    
T  2936327 acctattatttttgattttttggtgtataaaaa 2936359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 666 - 856
Target Start/End: Original strand, 3835702 - 3835890
Alignment:
Q  666 ctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatgaatcatatcagatgtgacagaacaactcgaatttgttaaacacgggaatga 765  Q
    ||||||||||||||||||| ||||||||||||  ||| |||||||||| |||||||||||| |||||||||||||| ||||||| |||||||  ||  ||    
T  3835702 ctcataagcgcatatcctctcaggatacaacaaattcttctctgatataaatcatatcagaggtgacagaacaacttgaatttgataaacacaaga--ga 3835799  T
Q  766 tgtaacccaagaactcaatggcattgaaaggagagtaagatattttttctggtttgatagtgtataaaaatgtttatgtttcaatattgat 856  Q
    || ||||||| |||||| ||  |||   || ||||||| ||| ||| ||||||||||| ||||| |||| || || |||||||||||||||    
T  3835800 tgcaacccaacaactcagtgatatttggagtagagtaaaataatttatctggtttgatcgtgtacaaaattggttttgtttcaatattgat 3835890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 647 - 781
Target Start/End: Complemental strand, 14579713 - 14579579
Alignment:
Q  647 tccttaagtacttatctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatgaatcatatcagatgtgacagaacaactcgaat 746  Q
    |||||||| | ||||| | |||||||||| |||||||| ||||||||||||||||| ||||||| ||||||||| | ||| |||||||||||||| ||||    
T  14579713 tccttaaggatttatccgcctcataagcgaatatcctctcaggatacaacaggttcttctctgacatgaatcatgtaagaggtgacagaacaacttgaat 14579614  T
Q  747 ttgttaaacacgggaatgatgtaacccaagaactc 781  Q
    ||| ||| ||  ||||||||| |||||| ||||||    
T  14579613 ttgataatcagaggaatgatgaaacccaggaactc 14579579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 596 - 702
Target Start/End: Original strand, 24044905 - 24045011
Alignment:
Q  596 acctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgcaggatacaa 695  Q
    |||||| ||| ||||| || ||||||||| ||||||||||| |||||||| |||||||| | ||||  | ||||||||||||||||||| ||||||||||    
T  24044905 acctgccaaacagtaatccattatataacatgaggcgtgacaaagtcactgtccttaaggatttattcgcctcataagcgcatatcctcccaggatacaa 24045004  T
Q  696 caggttc 702  Q
    || ||||    
T  24045005 catgttc 24045011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 697 - 757
Target Start/End: Complemental strand, 19973725 - 19973665
Alignment:
Q  697 aggttcctctctgatatgaatcatatcagatgtgacagaacaactcgaatttgttaaacac 757  Q
    |||||| |||||||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  19973725 aggttcttctctgatatgaatcaaatcagaggtgacagaacaactcgaatttgataaacac 19973665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 596 - 711
Target Start/End: Original strand, 24041602 - 24041717
Alignment:
Q  596 acctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgcaggatacaa 695  Q
    |||||| ||| ||||| || ||||||||| | ||||||||| |||||||| || ||||| | ||||  | |||||||||||||||||||  |||||||||    
T  24041602 acctgccaaacagtaatccattatataacataaggcgtgacaaagtcactgtctttaagaatttattcgcctcataagcgcatatcctcctaggatacaa 24041701  T
Q  696 caggttcctctctgat 711  Q
    || |||| || |||||    
T  24041702 catgttcttccctgat 24041717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 692 - 749
Target Start/End: Complemental strand, 19976148 - 19976091
Alignment:
Q  692 acaacaggttcctctctgatatgaatcatatcagatgtgacagaacaactcgaatttg 749  Q
    ||||||| ||| ||||||||||||||||||| | | ||||||||||||||||||||||    
T  19976148 acaacagattcttctctgatatgaatcatattaaaggtgacagaacaactcgaatttg 19976091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 666 - 748
Target Start/End: Original strand, 19697888 - 19697970
Alignment:
Q  666 ctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatgaatcat-atcagatgtgacagaacaactcgaattt 748  Q
    ||||||||||||||||||| |||||||||||| |||| || | | |||||||||| ||| || ||||||||||||||| |||||    
T  19697888 ctcataagcgcatatcctcccaggatacaaca-gttcttccccgttatgaatcataatcggaggtgacagaacaactcaaattt 19697970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 621 - 698
Target Start/End: Original strand, 6591846 - 6591924
Alignment:
Q  621 taacctgaggcgtgacgaagtcactatccttaagtactt-atctgtctcataagcgcatatcctcgcaggatacaacag 698  Q
    ||||||||||||||||| ||||||| ||||| || | || ||| | ||||||||||||||||||| |||||| ||||||    
T  6591846 taacctgaggcgtgacgtagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatgcaacag 6591924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 619 - 679
Target Start/End: Complemental strand, 19973790 - 19973730
Alignment:
Q  619 tataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcata 679  Q
    |||||||||||||||||| |||||||| |||||||  | ||||| | ||||||||||||||    
T  19973790 tataacctgaggcgtgacaaagtcactgtccttaaagatttatccgcctcataagcgcata 19973730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 1e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 623 - 774
Target Start/End: Complemental strand, 13292071 - 13291919
Alignment:
Q  623 acctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatgaatcatat 722  Q
    ||||||||| ||||||||| ||| |||||||  | ||||| | ||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||    
T  13292071 acctgaggcatgacgaagttactgtccttaaagatttatccgcctcataagcgcatatcctcccaggatacaacaggttattctctgatatgaatcatat 13291972  T
Q  723 cagatgtgacagaacaactcgaatttgttaaacac-gggaatgatgtaaccca 774  Q
    |||| |||| ||||||||||||||||| |||| ||  ||||||||||||||||    
T  13291971 cagaggtgatagaacaactcgaatttgataaatacatggaatgatgtaaccca 13291919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 616 - 719
Target Start/End: Original strand, 26703009 - 26703113
Alignment:
Q  616 ttatataacctgaggcgtgacgaagtcactatccttaagtactt-atctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatg 714  Q
    |||| |||||||| |||||||  ||||||| ||||| || | || ||| | ||||||| ||||||||||| || ||||||||| |||| |||||| ||||    
T  26703009 ttatgtaacctgatgcgtgacttagtcactgtccttgaggattttatccgcctcataaacgcatatcctcccaagatacaacaagttcttctctggtatg 26703108  T
Q  715 aatca 719  Q
    |||||    
T  26703109 aatca 26703113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 616 - 719
Target Start/End: Original strand, 26972742 - 26972846
Alignment:
Q  616 ttatataacctgaggcgtgacgaagtcactatccttaagtactt-atctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatg 714  Q
    |||| |||||||| |||||||  ||||||| ||||| || | || ||| | ||||||| ||||||||||| || ||||||||| |||| |||||| ||||    
T  26972742 ttatgtaacctgatgcgtgacttagtcactgtccttgaggattttatccgcctcataaacgcatatcctcccaagatacaacaagttcttctctggtatg 26972841  T
Q  715 aatca 719  Q
    |||||    
T  26972842 aatca 26972846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 616 - 748
Target Start/End: Complemental strand, 18594940 - 18594807
Alignment:
Q  616 ttatataacctgaggcgtgacgaagtcactatcctt-aagtacttatctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatg 714  Q
    |||| ||||||||||||||||   |||||| ||||| |||   ||||| | ||||||||||||||| ||| |||||||||||| |||| || | | ||||    
T  18594940 ttatgtaacctgaggcgtgacattgtcactgtccttgaagattttatccgcctcataagcgcatattctcacaggatacaaca-gttcttccccgttatg 18594842  T
Q  715 aatcatatcag-atgtgacagaacaactcgaattt 748  Q
    ||||||| | | | ||||||||||||||| |||||    
T  18594841 aatcataactgaaggtgacagaacaactcaaattt 18594807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 720
Target Start/End: Complemental strand, 39292244 - 39292120
Alignment:
Q  596 acctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtactt-atctgtctcataagcgcatatcctcgcaggataca 694  Q
    |||||||||| | ||| || |||| |||||||||| ||||   ||||||| |||||||| | || ||| | ||||||||||||||||||  ||| |||||    
T  39292244 acctgcaaaacaataaaccattatctaacctgaggtgtgatatagtcactgtccttaaggattttatccgcctcataagcgcatatccttccagaataca 39292145  T
Q  695 acaggttcctctctgatatgaatcat 720  Q
    ||| |||| |||| | ||||||||||    
T  39292144 aca-gttcttctccgttatgaatcat 39292120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 3e-29; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 858 - 972
Target Start/End: Complemental strand, 12896184 - 12896070
Alignment:
Q  858 agtgacagaaccaggaatttttagtagtgggggcagtatatatacaaacttttaccatgaaacatatataatattttatttctgaaagcataaattatac 957  Q
    |||||| || ||| || ||||||||| ||||||| |||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  12896184 agtgacggatccaagattttttagtaatgggggcggtatatgtacaaatttttaccatgaagcatatataatattttatttctgaaagcataaaatatac 12896085  T
Q  958 attgtaaacattaat 972  Q
    |  ||||||||||||    
T  12896084 accgtaaacattaat 12896070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 542 - 748
Target Start/End: Complemental strand, 38678886 - 38678679
Alignment:
Q  542 aaattgcggtaatttgaagtcagttacggcgaagtaaacaaacaaaaaattatgacctgcaaaatagtaagcc---tttatataacctgaggcgtgacga 638  Q
    ||||| |||| |||||||||| || |||| ||||||| ||||||| || | ||||||||||| ||||||||||   ||||||||||||||||||||||      
T  38678886 aaattacggtgatttgaagtcggtaacggtgaagtaagcaaacaagaattcatgacctgcaatatagtaagccgcatttatataacctgaggcgtgacat 38678787  T
Q  639 agtcactatccttaagtactt-atctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatgaatcat-atcagatgtgacagaa 736  Q
    ||||| | || || || | || ||| ||||||||||||||||||||  ||||||||||||| ||||   | | |||||||||| ||| || |||||||||    
T  38678786 agtca-tgtctttgaggatttgatccgtctcataagcgcatatccttacaggatacaacagtttcc---ccgttatgaatcataatcggaggtgacagaa 38678691  T
Q  737 caactcgaattt 748  Q
    |||||| |||||    
T  38678690 caactcaaattt 38678679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 30 - 166
Target Start/End: Original strand, 11084587 - 11084721
Alignment:
Q  30 taaaccactgaacacattgccaagtacttctttggcagcaaaagcagtagcacctcctgtataaagataaagatataa-atagaaccataaaaaagttcc 128  Q
    |||||| |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| |||||||| ||| || ||||||| || ||||  ||||    
T  11084587 taaaccgctgaacacattgccaagtacgtctctggcagcaaaagcagtagcaactcctgtat-aagataaa-ataaaatatagaacaatgaaaattttcc 11084684  T
Q  129 atccattatttttatcagtggaaaagtaaataagcaac 166  Q
    || | || || ||||||| |||||||||||||||||||    
T  11084685 atacctt-ttcttatcagcggaaaagtaaataagcaac 11084721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 558 - 651
Target Start/End: Complemental strand, 38677000 - 38676904
Alignment:
Q  558 aagtcagttacggcgaagtaaacaaacaaaaaattatgacctgcaaaatagtaagcc---tttatataacctgaggcgtgacgaagtcactatcctt 651  Q
    ||||| || |||| ||||||| ||||||| || | ||||||||||| ||||||||||   ||||||||||||||||||||||  ||||||| |||||    
T  38677000 aagtcggtaacggtgaagtaagcaaacaagaattcatgacctgcaacatagtaagccgcatttatataacctgaggcgtgacatagtcactgtcctt 38676904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 619 - 677
Target Start/End: Original strand, 41739878 - 41739936
Alignment:
Q  619 tataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgca 677  Q
    ||||||||||||||||| |||||||||||||||||| | ||||| ||||||||| ||||    
T  41739878 tataacctgaggcgtgatgaagtcactatccttaaggatttatccgtctcataatcgca 41739936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 617 - 682
Target Start/End: Original strand, 33940435 - 33940500
Alignment:
Q  617 tatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcc 682  Q
    ||||||||||||||| ||||||||||||| |||||||| | ||||| |||||||||| ||| ||||    
T  33940435 tatataacctgaggcttgacgaagtcactgtccttaaggatttatccgtctcataagtgcaaatcc 33940500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 622 - 748
Target Start/End: Original strand, 1788897 - 1789024
Alignment:
Q  622 aacctgaggcgtgacgaagtcactatccttaagtactt-atctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatgaatcat 720  Q
    |||||||||||||||  ||||||| ||||| || | || ||| | ||||||||||||||||||| |||||||||||| |||| || | | ||||||||||    
T  1788897 aacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca-gttcttccccgttatgaatcat 1788995  T
Q  721 -atcagatgtgacagaacaactcgaattt 748  Q
     | | || ||||||||||||||| |||||    
T  1788996 aaccggaggtgacagaacaactcaaattt 1789024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 617 - 696
Target Start/End: Original strand, 4977382 - 4977461
Alignment:
Q  617 tatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgcaggatacaac 696  Q
    ||||||| |||||||||||| ||| ||||||| ||||| | ||||||| ||| || || ||||||||| |||||||||||    
T  4977382 tatataagctgaggcgtgacaaagacactatctttaaggatttatctgcctcgtatgcacatatcctcccaggatacaac 4977461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 621 - 748
Target Start/End: Original strand, 39655696 - 39655824
Alignment:
Q  621 taacctgaggcgtgacgaagtcactatccttaagta-cttatctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatgaatca 719  Q
    ||||||||||||||||  ||||||| ||||| || |  ||||| | |||||||| |||||||||| || ||||||||| |||| |||| | |||||||||    
T  39655696 taacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagtgcatatcctcccatgatacaaca-gttcttctccgttatgaatca 39655794  T
Q  720 t-atcagatgtgacagaacaactcgaattt 748  Q
    | | | |||||||||||||| ||| |||||    
T  39655795 taaccggatgtgacagaacagctcaaattt 39655824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 3e-29; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 575 - 748
Target Start/End: Original strand, 38825429 - 38825602
Alignment:
Q  575 gtaaacaaacaaaaaattatgacctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtactt-atctgtctcataag 673  Q
    ||||||||| || |||| ||||| |||||||||||||||| ||| ||| | ||||| |||||||||||||| |||||||| | || |||   |||||||     
T  38825429 gtaaacaaataagaaatcatgac-tgcaaaatagtaagccattacatagcttgaggtgtgacgaagtcactgtccttaaggattttatcctcctcataaa 38825527  T
Q  674 cgcatatcctcgcaggatacaacaggttcctctctgatatgaatcatatcagatgtgacagaacaactcgaattt 748  Q
    ||||||||||| |||||||||||| |||| |||||| |||||||||||||| | ||| |||||||||| ||||||    
T  38825528 cgcatatcctcccaggatacaacaagttcttctctgctatgaatcatatcaaaggtggcagaacaacttgaattt 38825602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 575 - 748
Target Start/End: Original strand, 38828639 - 38828812
Alignment:
Q  575 gtaaacaaacaaaaaattatgacctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagta-cttatctgtctcataag 673  Q
    |||||||||||| |||| ||||  |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |  ||||| | || |||||    
T  38828639 gtaaacaaacaagaaatcatgat-tgcaaaatagtaagccgttacataacttgaggcgtgacgaagtcactatccttaaggattttatccgccttataag 38828737  T
Q  674 cgcatatcctcgcaggatacaacaggttcctctctgatatgaatcatatcagatgtgacagaacaactcgaattt 748  Q
    | |||||| || ||||||| |||| |||| || ||  ||||||||||||||||  || |||||||||| ||||||    
T  38828738 ctcatatcttcccaggataaaacaagttcttccctactatgaatcatatcagagttggcagaacaacttgaattt 38828812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 620 - 746
Target Start/End: Complemental strand, 43254236 - 43254110
Alignment:
Q  620 ataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatgaatca 719  Q
    ||||| ||||||||||| |||||||| |||||||| | ||||  | ||||||||||||||||||| |||||||||||| |||| || |  ||||||||||    
T  43254236 ataacatgaggcgtgacaaagtcactgtccttaaggatttattcgcctcataagcgcatatcctcccaggatacaacatgttcttcccatatatgaatca 43254137  T
Q  720 tatcagatgtgacagaacaactcgaat 746  Q
    ||||||| |||||||||||||| ||||    
T  43254136 tatcagaggtgacagaacaacttgaat 43254110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 22203679 - 22203591
Alignment:
Q  30 taaaccactgaacacattgccaagtacttctttggcagcaaaagcagtagcacctcctgtataaag-ataaagatataaatagaaccat 117  Q
    |||||||||| |||||||||||||||||||||| | |||||||||||||||| ||| ||||||||| | ||||||| ||||||||||||    
T  22203679 taaaccactgcacacattgccaagtacttcttttggagcaaaagcagtagcaactcttgtataaagaaaaaagatagaaatagaaccat 22203591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 596 - 726
Target Start/End: Original strand, 9111513 - 9111643
Alignment:
Q  596 acctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagta-cttatctgtctcataagcgcatatcctcgcaggataca 694  Q
    |||||||||||||||| |  |||||||| ||||||||||||  ||||||| ||||| || |  ||||| | |||||||||||||||| || |||||||||    
T  9111513 acctgcaaaatagtaaactgttatataatctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcttcccaggataca 9111612  T
Q  695 acaggttcctctctgatatgaatcatatcaga 726  Q
    ||| |||| || ||||||| ||||||||||||    
T  9111613 aca-gttcttcactgatataaatcatatcaga 9111643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 617 - 742
Target Start/End: Complemental strand, 39197337 - 39197211
Alignment:
Q  617 tatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatgaa 716  Q
    |||||||  ||||||||||||||||| || |  ||||| | ||||||| ||||||||||||||||||  |||||||||||| || ||||||  |||||||    
T  39197337 tatataatttgaggcgtgacgaagtcgctgtatttaaggatttatctgcctcataagcgcatatcctaccaggatacaacaagtccctctccaatatgaa 39197238  T
Q  717 tcata-tcagatgtgacagaacaactc 742  Q
    ||||| ||  | |||||||||||||||    
T  39197237 tcatagtcgaaggtgacagaacaactc 39197211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 596 - 717
Target Start/End: Original strand, 49387578 - 49387699
Alignment:
Q  596 acctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgcaggatacaa 695  Q
    |||||| ||| ||||| || ||||||||| ||||||||||| ||||||||  ||||||| | ||||  | || |||||||||||||||| ||||||||||    
T  49387578 acctgccaaacagtaatccattatataacatgaggcgtgacaaagtcactggccttaaggatttattcgccttataagcgcatatcctcccaggatacaa 49387677  T
Q  696 caggttcctctctgatatgaat 717  Q
    || |||| || ||||| |||||    
T  49387678 catgttcttccctgatgtgaat 49387699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 616 - 724
Target Start/End: Original strand, 21501242 - 21501350
Alignment:
Q  616 ttatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatga 715  Q
    ||||||||  ||||||||||| ||||| ||||| ||||| | ||||| |||||||||| | ||||||||  ||||||||||| |||| ||||| |||| |    
T  21501242 ttatataatatgaggcgtgacaaagtcgctatctttaaggatttatccgtctcataagtgtatatcctcctaggatacaacatgttcttctctaatataa 21501341  T
Q  716 atcatatca 724  Q
    |||||||||    
T  21501342 atcatatca 21501350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 658 - 748
Target Start/End: Complemental strand, 1953770 - 1953680
Alignment:
Q  658 ttatctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatgaatcatatc-agatgtgacagaacaactcgaattt 748  Q
    ||||||| |||||||||| |||||||| |||||||||||| |||| || ||| ||||||||||| |  || ||||||||||||||| |||||    
T  1953770 ttatctgcctcataagcgaatatcctcccaggatacaaca-gttcttccctgttatgaatcataacgggaggtgacagaacaactcaaattt 1953680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 621 - 697
Target Start/End: Original strand, 12141649 - 12141726
Alignment:
Q  621 taacctgaggcgtgacgaagtcactatccttaagtactt-atctgtctcataagcgcatatcctcgcaggatacaaca 697  Q
    ||||||||||||||||  ||||||| ||||| || | || ||| | ||||||||||||||||||| ||||||||||||    
T  12141649 taacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca 12141726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 596 - 746
Target Start/End: Complemental strand, 110266 - 110116
Alignment:
Q  596 acctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtactt-atctgtctcataagcgcatatcctcgcaggataca 694  Q
    |||||||||||||||| |  |||| |||| |||||||||||  ||||||| ||||| || | || ||| | ||||||| ||||||||||| || ||||||    
T  110266 acctgcaaaatagtaatctgttatctaacatgaggcgtgacatagtcactgtccttgaggattttatccgcctcataaacgcatatcctcccaagataca 110167  T
Q  695 acaggttcctctctgatatgaatcatatcagatgtgacagaacaactcgaat 746  Q
    |||| ||| || |||||||||||||| ||||| |||||||||||||||||||    
T  110166 acag-ttcttcgctgatatgaatcatgtcagaggtgacagaacaactcgaat 110116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 616 - 746
Target Start/End: Complemental strand, 127825 - 127695
Alignment:
Q  616 ttatataacctgaggcgtgacgaagtcactatccttaagtactt-atctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatg 714  Q
    |||| ||||||||||||||||  ||||||| ||||| || | || ||| | |||| || ||||||||||| || |||||||||| ||| || ||||||||    
T  127825 ttatctaacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcagaaacgcatatcctcccatgatacaacag-ttcttccctgatatg 127727  T
Q  715 aatcatatcagatgtgacagaacaactcgaat 746  Q
    |||||| ||||| |||||||||||||||||||    
T  127726 aatcatgtcagaggtgacagaacaactcgaat 127695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 596 - 774
Target Start/End: Original strand, 6732 - 6908
Alignment:
Q  596 acctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtactt-atctgtctcataagcgcatatcctcgcaggataca 694  Q
    |||||||||| | ||| || |||| ||| ||||||||||||  ||||||| || || || | || ||| | |||||||| |||||||||  || ||||||    
T  6732 acctgcaaaacaataaaccattatctaaactgaggcgtgacatagtcactgtcattgaggattttatccgcctcataagtgcatatccttccatgataca 6831  T
Q  695 acaggttcctctctgatatgaatcatatcagatgtgacagaacaactcgaatttgttaaacacgggaatgatgtaaccca 774  Q
    |||| ||  || ||||||||||||||||||||  ||||||||||||| ||||||| ||||||| |||  |||||||||||    
T  6832 acagtttt-tccctgatatgaatcatatcagagatgacagaacaacttgaatttgataaacacagga--gatgtaaccca 6908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 666 - 757
Target Start/End: Complemental strand, 12188 - 12097
Alignment:
Q  666 ctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatgaatcatatcagatgtgacagaacaactcgaatttgttaaacac 757  Q
    |||| ||||||||||| ||  ||||||||||| |||| || || ||||||||||||||||| ||||||||||||||| ||| || |||||||    
T  12188 ctcacaagcgcatatcatcctaggatacaacaagttcttcccttatatgaatcatatcagaggtgacagaacaactccaatctgataaacac 12097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 649 - 721
Target Start/End: Original strand, 4950 - 5022
Alignment:
Q  649 cttaagtacttatctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatgaatcata 721  Q
    |||||| | ||||||| ||||||||| ||||||||| || |||||||||||||| ||| ||||||||||||||    
T  4950 cttaaggatttatctgcctcataagcacatatcctcccaagatacaacaggttcttctatgatatgaatcata 5022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 658 - 757
Target Start/End: Complemental strand, 448801 - 448705
Alignment:
Q  658 ttatctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatgaatcatatcagatgtgacagaacaactcgaatttgttaaacac 757  Q
    ||||||| ||||||| ||||||||||| | |||||||||| |||||   || ||||||||||||||| | |||||| ||||||| |||| || |||||||    
T  448801 ttatctgcctcataatcgcatatcctctcgggatacaacatgttcc---ctaatatgaatcatatcaaaggtgacaaaacaacttgaatctgataaacac 448705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 593 - 748
Target Start/End: Complemental strand, 2590649 - 2590493
Alignment:
Q  593 atgacctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtactt-atctgtctcataagcgcatatcctcgcaggat 691  Q
    ||||||||||| || |||| || ||  |||||||||||||||||  ||||||| ||||| || | || ||  | ||||||||||||||||||| ||||||    
T  2590649 atgacctgcaacatggtaaaccgttcaataacctgaggcgtgacatagtcactgtccttgaggattttattcgcctcataagcgcatatcctcccaggat 2590550  T
Q  692 acaacaggttcctctctgatatgaatcat-atcagatgtgacagaacaactcgaattt 748  Q
    |||||| |||| || | | |||||||||| | | || ||||||||||||||| |||||    
T  2590549 acaaca-gttcttccccgttatgaatcataaccggaggtgacagaacaactcaaattt 2590493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 616 - 717
Target Start/End: Original strand, 27083082 - 27083183
Alignment:
Q  616 ttatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctcgcaggatacaacaggttcctctctgatatga 715  Q
    ||||||||  |||||| |||| ||||| || |||| ||| | ||||| | |||| |||||||||||||| ||||||||||||||||| || || ||||||    
T  27083082 ttatataagatgaggcatgacaaagtcgctgtcctgaaggatttatccgcctcacaagcgcatatcctcccaggatacaacaggttcttccctaatatga 27083181  T
Q  716 at 717  Q
    ||    
T  27083182 at 27083183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 596 - 698
Target Start/End: Complemental strand, 21189548 - 21189444
Alignment:
Q  596 acctgcaaaatagtaagcc-tttatataacctgaggcgtgacgaagtcactatccttaagtactt-atctgtctcataagcgcatatcctcgcaggatac 693  Q
    |||||||||||||||| |  ||||| ||||||||||||||||  ||||||| ||||| || | || ||| | ||||||||||||||||||| | ||||||    
T  21189548 acctgcaaaatagtaaactgtttatctaacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctccccggatac 21189449  T
Q  694 aacag 698  Q
    |||||    
T  21189448 aacag 21189444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 607 - 684
Target Start/End: Original strand, 10941409 - 10941485
Alignment:
Q  607 agtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctc 684  Q
    ||||| || ||||||||| ||||||||||| |||||||| |||||||| | ||||  | |||||||||||||||||||    
T  10941409 agtaatccattatataacatgaggcgtgac-aagtcactgtccttaaggatttattcgcctcataagcgcatatcctc 10941485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 607 - 684
Target Start/End: Original strand, 10947278 - 10947354
Alignment:
Q  607 agtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtacttatctgtctcataagcgcatatcctc 684  Q
    ||||| || ||||||||| ||||||||||| |||||||| |||||||| | ||||  | |||||||||||||||||||    
T  10947278 agtaatccattatataacatgaggcgtgac-aagtcactgtccttaaggatttattcgcctcataagcgcatatcctc 10947354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 677 - 757
Target Start/End: Complemental strand, 27107367 - 27107287
Alignment:
Q  677 atatcctcgcaggatacaacaggttcctctctgatatgaatcatatcagatgtgacagaacaactcgaatttgttaaacac 757  Q
    |||||||| |||||||||||| |||| || ||||| | ||||| |||||| ||||||||||| || |||| || |||||||    
T  27107367 atatcctcccaggatacaacatgttcttccctgatgtaaatcacatcagaggtgacagaacagcttgaatctgataaacac 27107287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 624 - 698
Target Start/End: Complemental strand, 82739 - 82664
Alignment:
Q  624 cctgaggcgtgacgaagtcactatccttaagtactt-atctgtctcataagcgcatatcctcgcaggatacaacag 698  Q
    |||||||||||||  ||||||||||||| || | || ||| | ||||||||||||||||||| |||||||||||||    
T  82739 cctgaggcgtgacatagtcactatccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacag 82664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University