View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13773_high_11 (Length: 371)
Name: NF13773_high_11
Description: NF13773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13773_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 349
Target Start/End: Complemental strand, 3810099 - 3809764
Alignment:
| Q |
14 |
attatactgaataagttgttgttggactaccaattgataaattattctatatttggcttaatggtttcaattgatcaatgaaatgaacaattttcttctt |
113 |
Q |
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| T |
3810099 |
attatactgaataagctgttgttggactaccaattgataaattattctatatttggcttaatggattcaattgattaatgaaatgaactattttcttctt |
3810000 |
T |
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| Q |
114 |
ctcatgtacgtgttgttacccataattcatttctagcaatagtgttaccgcaatttagaaatggaacaatatattaaagatgttagagtgcagattatga |
213 |
Q |
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| T |
3809999 |
ctcatttacgtgttgttacccataattcatttctagcaatagtgttaccgcaatttagaaatagaacgatatattaaagatgttagagtgcagattatga |
3809900 |
T |
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| Q |
214 |
cactaaacaagctgttacagtgcttccaatttcctccaaacttaattgcttagttttttgcattctttgtggatgatgtcattaaatagttcacgataag |
313 |
Q |
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| T |
3809899 |
cactaaataagctgttacactgcttccaatttcctccaaacttaattgctcagttttttgcattctttgtggatgatatcattaaatagttcaggataag |
3809800 |
T |
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| Q |
314 |
tgaatccctacacaacaaacaaacacacttaagcct |
349 |
Q |
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| T |
3809799 |
tgaatccctacacaacaaacaaacacacgtaagcct |
3809764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 60 - 211
Target Start/End: Complemental strand, 3810244 - 3810095
Alignment:
| Q |
60 |
ctatatttggcttaatggtttcaattgatcaatgaaatgaacaattttcttcttctcatgtacgtgttgttacccataattcatttctagcaatagtgtt |
159 |
Q |
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||||||||||||||||||| ||||||||| |||||||| ||| |||||||||| | | ||||||||||||||||||||| |||| || ||||||| | |
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| T |
3810244 |
ctatatttggcttaatggtgtcaattgataaatgaaataaactattttcttctctt--tttacgtgttgttacccataattgatttttaacaatagttgt |
3810147 |
T |
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| Q |
160 |
accgcaatttagaaatggaacaatatattaaagatgttagagtgcagattat |
211 |
Q |
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| T |
3810146 |
accgcaacttagaaatggaacaatatctaaaagttgttacagtgcaaattat |
3810095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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