View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13773_high_16 (Length: 295)
Name: NF13773_high_16
Description: NF13773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13773_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 8749731 - 8749470
Alignment:
| Q |
16 |
atgaagaatggaggtggtggtggttcagatccggccatggcgccaccggattcagagaaatgttggttgtttattttcaatacatatgcaaattgcaagc |
115 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
8749731 |
atgaagaatggaggtggtggtggttcaaatccggccatggcgtcaccggattcagagaaatgttggctgtttattttcaatacatgtgcaaattgcaagc |
8749632 |
T |
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| Q |
116 |
gaccaatttccagatactttctctaacatcgctcttggttgaacaatctccctaacctaattcaaatttatttcctccacaacaaaacaaagcattgaat |
215 |
Q |
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|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8749631 |
gagcaatttccagatactttctctaacatctctcttggttgaacaatctccctaacctaattcaaatttatttcctccacaccaaaacaaagcattgaat |
8749532 |
T |
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| Q |
216 |
gatttaatttcagtttaagaaaagttttgatggaaaggggcaataaaaaatatacatgattt |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8749531 |
gatttaatttcagtttaagaaaagttttgatggaaaggggcaataaaaaatatacatgattt |
8749470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 277
Target Start/End: Original strand, 24963491 - 24963752
Alignment:
| Q |
16 |
atgaagaatggaggtggtggtggttcagatccggccatggcgccaccggattcagagaaatgttggttgtttattttcaatacatatgcaaattgcaagc |
115 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
24963491 |
atgaagaatggaggtggtggtggttcaaatccggccatggcgtcaccggattcagagaaatgttggctgtttattttcaatacatgtgcaaattgcaagc |
24963590 |
T |
|
| Q |
116 |
gaccaatttccagatactttctctaacatcgctcttggttgaacaatctccctaacctaattcaaatttatttcctccacaacaaaacaaagcattgaat |
215 |
Q |
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|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24963591 |
gagcaatttccagatactttctctaacatctctcttggttgaacaatctccctaacctaattcaaatttatttcctccacaccaaaacaaagcattgaat |
24963690 |
T |
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| Q |
216 |
gatttaatttcagtttaagaaaagttttgatggaaaggggcaataaaaaatatacatgattt |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24963691 |
gatttaatttcagtttaagaaaagttttgatggaaaggggcaataaaaaatatacatgattt |
24963752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 277
Target Start/End: Original strand, 38112921 - 38113182
Alignment:
| Q |
16 |
atgaagaatggaggtggtggtggttcagatccggccatggcgccaccggattcagagaaatgttggttgtttattttcaatacatatgcaaattgcaagc |
115 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
38112921 |
atgaagaatggaggtggtggtggttcaaatccggccatggcgtcaccggattcagagaaatgttggctgtttattttcaatacatgtgcaaattgcaagc |
38113020 |
T |
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| Q |
116 |
gaccaatttccagatactttctctaacatcgctcttggttgaacaatctccctaacctaattcaaatttatttcctccacaacaaaacaaagcattgaat |
215 |
Q |
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|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38113021 |
gagcaatttccagatactttctctaacatctctcttggttgaacaatctccctaacctaattcaaatttatttcctccacaccaaaacaaagcattgaat |
38113120 |
T |
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| Q |
216 |
gatttaatttcagtttaagaaaagttttgatggaaaggggcaataaaaaatatacatgattt |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38113121 |
gatttaatttcagtttaagaaaagttttgatggaaaggggcaataaaaaatatacatgattt |
38113182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 40403807 - 40403546
Alignment:
| Q |
16 |
atgaagaatggaggtggtggtggttcagatccggccatggcgccaccggattcagagaaatgttggttgtttattttcaatacatatgcaaattgcaagc |
115 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
40403807 |
atgaagaatggaggtggtggtggttcaaatccggccatggcgtcaccggattcagagaaatgttggctgtttattttcaatacatgtgcaaattgcaagc |
40403708 |
T |
|
| Q |
116 |
gaccaatttccagatactttctctaacatcgctcttggttgaacaatctccctaacctaattcaaatttatttcctccacaacaaaacaaagcattgaat |
215 |
Q |
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|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40403707 |
gagcaatttccagatactttctctaacatctctcttggttgaacaatctccctaacctaattcaaatttatttcctccacaccaaaacaaagcattgaat |
40403608 |
T |
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| Q |
216 |
gatttaatttcagtttaagaaaagttttgatggaaaggggcaataaaaaatatacatgattt |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40403607 |
gatttaatttcagtttaagaaaagttttgatggaaaggggcaataaaaaatatacatgattt |
40403546 |
T |
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