View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13773_high_19 (Length: 265)

Name: NF13773_high_19
Description: NF13773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13773_high_19
NF13773_high_19
[»] chr5 (11 HSPs)
chr5 (1-248)||(6966684-6966931)
chr5 (69-203)||(26394275-26394409)
chr5 (69-195)||(747089-747215)
chr5 (69-197)||(5381043-5381171)
chr5 (75-203)||(40988315-40988443)
chr5 (102-203)||(38090970-38091071)
chr5 (69-201)||(25525344-25525476)
chr5 (69-203)||(25752508-25752641)
chr5 (69-161)||(39048070-39048162)
chr5 (102-203)||(33159411-33159512)
chr5 (126-203)||(25752303-25752380)
[»] chr3 (15 HSPs)
chr3 (69-203)||(40278724-40278858)
chr3 (69-203)||(27655841-27655975)
chr3 (69-207)||(33237344-33237482)
chr3 (69-203)||(3021674-3021808)
chr3 (102-203)||(43914114-43914215)
chr3 (69-203)||(37090052-37090186)
chr3 (69-203)||(45149381-45149515)
chr3 (108-203)||(22847318-22847413)
chr3 (69-203)||(1587427-1587561)
chr3 (69-163)||(36951501-36951595)
chr3 (69-203)||(45969721-45969855)
chr3 (69-197)||(17754412-17754540)
chr3 (69-197)||(19055732-19055860)
chr3 (69-203)||(33777914-33778048)
chr3 (108-203)||(29492596-29492691)
[»] chr1 (8 HSPs)
chr1 (69-199)||(9033976-9034106)
chr1 (69-202)||(37328049-37328182)
chr1 (69-203)||(32536767-32536901)
chr1 (69-203)||(45217159-45217293)
chr1 (69-201)||(27134860-27134992)
chr1 (102-197)||(44744019-44744114)
chr1 (69-163)||(7875301-7875395)
chr1 (102-203)||(52580033-52580134)
[»] chr8 (8 HSPs)
chr8 (69-208)||(30728492-30728631)
chr8 (59-247)||(33583285-33583473)
chr8 (69-197)||(34055645-34055773)
chr8 (81-203)||(12764681-12764803)
chr8 (69-163)||(41393168-41393262)
chr8 (102-200)||(41576312-41576410)
chr8 (102-203)||(41542665-41542766)
chr8 (131-203)||(39584068-39584140)
[»] chr7 (7 HSPs)
chr7 (76-203)||(40260163-40260290)
chr7 (69-203)||(28293967-28294101)
chr7 (102-201)||(4236728-4236827)
chr7 (69-203)||(33210859-33210993)
chr7 (76-193)||(35434984-35435101)
chr7 (69-156)||(41798704-41798791)
chr7 (116-196)||(21366841-21366919)
[»] chr6 (3 HSPs)
chr6 (69-201)||(8590057-8590189)
chr6 (69-203)||(26582595-26582729)
chr6 (110-203)||(1799110-1799203)
[»] chr4 (10 HSPs)
chr4 (76-203)||(40033739-40033866)
chr4 (76-201)||(220185-220311)
chr4 (102-203)||(36928016-36928117)
chr4 (102-203)||(42987449-42987550)
chr4 (102-197)||(54445135-54445230)
chr4 (108-190)||(39632988-39633070)
chr4 (81-197)||(38392628-38392744)
chr4 (69-197)||(1565317-1565444)
chr4 (108-199)||(46614176-46614267)
chr4 (69-159)||(40278876-40278966)
[»] chr2 (7 HSPs)
chr2 (76-203)||(10574469-10574596)
chr2 (69-203)||(5438616-5438750)
chr2 (69-196)||(27481662-27481789)
chr2 (69-203)||(18059883-18060017)
chr2 (69-163)||(41726481-41726575)
chr2 (102-203)||(43207445-43207546)
chr2 (69-163)||(6081361-6081454)
[»] scaffold0474 (1 HSPs)
scaffold0474 (69-196)||(12730-12857)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 6966931 - 6966684
Alignment:
Q  1 cacccttttcattcatgtacatgtatgatgtatcaataatcagtaagatagtatgtttacagagaaggtaaaatccaaaaattaaaaagacaagaagcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6966931 cacccttttcattcatgtacatgtatgatgtatcaataatcagtaagatagtatgtttacagagaaggtaaaatccaaaaattaaaaagacaagaagcta 6966832  T
Q  101 atgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtgatttaccagcttcatgcagaagatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6966831 atgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgctgggcaatgtgatttaccagcttcatgcagaagatc 6966732  T
Q  201 tataacacttgctgcggaacatgctgcagctaatgagagatatgacat 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6966731 tataacacttgctgcggaacatgctgcagctaatgagagatatgacat 6966684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 26394275 - 26394409
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  |||||  ||||| |||||||||||||||||||||||||||||| || ||||||||| ||||||||||||  |      
T  26394275 taaaaaccaaacattaaaaagatatcaagctgttgaaataaaccaagacaagaatgccatagcagcagaaaattgatatctatcacataactttgtagta 26394374  T
Q  169 caatgtgatttaccagcttcatgcagaagatctat 203  Q
    ||||||||| |||| |||||||| ||||| |||||    
T  26394375 caatgtgatataccggcttcatgtagaaggtctat 26394409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 195
Target Start/End: Complemental strand, 747215 - 747089
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  ||| |  ||||| |||||||||||||||||||||||||||| | || ||||||||| ||||||||||||| |      
T  747215 taaaaaccaaacattaaaaagatatcaagttgttgaaataaaccaagacaagaatgccatagcagcaaaaaattgatatctatcacataactttgcagta 747116  T
Q  169 caatgtgatttaccagcttcatgcaga 195  Q
    ||||||||| |||| ||||||||||||    
T  747115 caatgtgatataccggcttcatgcaga 747089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 197
Target Start/End: Complemental strand, 5381171 - 5381043
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| ||||||| || |  |||||  ||||| ||||||||||||||||| |||||||||||| || ||||||||| ||||||||||||  |      
T  5381171 taaaaaccaaacattaaaatgatatcaagctgttgaaataaaccaagacaagaatgtcatagcagcagaaaattgatatctatcacataactttgtagta 5381072  T
Q  169 caatgtgatttaccagcttcatgcagaag 197  Q
    || |||||| |||| ||||||||||||||    
T  5381071 cattgtgatataccggcttcatgcagaag 5381043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 40988315 - 40988443
Alignment:
Q  75 ccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgt 174  Q
    ||||| |||||||||| |  |||||  ||||| ||||||||||||||||| |||| ||||| | || ||||||||| ||||||||||||  |  ||||||    
T  40988315 ccaaacattaaaaagatatcaagctgttgaaataaaccaagacaagaatgtcataacagcaaaaaattgatatctatcacataactttgtagtacaatgt 40988414  T
Q  175 gatttaccagcttcatgcagaagatctat 203  Q
    ||| |||| |||||||||||||| |||||    
T  40988415 gatataccggcttcatgcagaaggtctat 40988443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 38091071 - 38090970
Alignment:
Q  102 tgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtgatttaccagcttcatgcagaagatct 201  Q
    ||||| ||||||||||||||||| |||||||||| | || ||||||||| ||||||||||||  |  ||||||||| |||| |||| ||||||||| |||    
T  38091071 tgaaataaaccaagacaagaatgtcatagcagcaaaaaattgatatctatcacataactttgtagtacaatgtgatataccggctttatgcagaaggtct 38090972  T
Q  202 at 203  Q
    ||    
T  38090971 at 38090970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 201
Target Start/End: Original strand, 25525344 - 25525476
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  ||| |  ||||| |||||||||||| ||||||||||  ||| | || ||||||||| ||||||||||||| ||     
T  25525344 taaaaaccaaacattaaaaagatatcaagatgttgaaataaaccaagacaaaaatgccatagatgcaaaaaattgatatctatcacataactttgcagga 25525443  T
Q  169 caatgtgatttaccagcttcatgcagaagatct 201  Q
    |||||| || |||| |||||||||| |||||||    
T  25525444 caatgtaatctaccggcttcatgcaaaagatct 25525476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 25752641 - 25752508
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  ||| |  ||||| |||||||||| ||||||| ||||||||||| || |||||| || ||||||||||||  |      
T  25752641 taaaaaccaaacattaaaaagatatcaagttgttgaaataaaccaagacgagaatgc-atagcagcagaaaattgatatatatcacataactttgtagaa 25752543  T
Q  169 caatgtgatttaccagcttcatgcagaagatctat 203  Q
    ||||||||| |||| |||||||||||||| |||||    
T  25752542 caatgtgatctaccggcttcatgcagaaggtctat 25752508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 39048162 - 39048070
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactt 161  Q
    ||||| ||||| |||||||||| |  |||||  ||||| |||||| ||||||||||||||||||||| | || ||||||||| ||||||||||    
T  39048162 taaaaaccaaacattaaaaagatatcaagctgttgaaataaaccatgacaagaatgccatagcagcataaaattgatatctatcacataactt 39048070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 33159512 - 33159411
Alignment:
Q  102 tgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtgatttaccagcttcatgcagaagatct 201  Q
    ||||| ||||||||||||||||| ||||| |||| | || |||||| || ||||||||||||     ||||||||| |||| |||||||||||||| |||    
T  33159512 tgaaataaaccaagacaagaatgtcatagtagcaaaaaattgatatttatcacataactttgtactacaatgtgatataccggcttcatgcagaaggtct 33159413  T
Q  202 at 203  Q
    ||    
T  33159412 at 33159411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 25752380 - 25752303
Alignment:
Q  126 catagcagcagacaactgatatctaccacataactttgccgggcaatgtgatttaccagcttcatgcagaagatctat 203  Q
    |||||||||||| || |||||| || ||||||||||||  |  ||||||||| |||| |||||||||||||| |||||    
T  25752380 catagcagcagaaaattgatatatatcacataactttgtagtacaatgtgatctaccggcttcatgcagaaggtctat 25752303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 40278858 - 40278724
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  |||||  ||||| |||||||||||||||||||||||||||||| || ||||||||| ||||||||||||  |      
T  40278858 taaaaaccaaacattaaaaagatatcaagctgttgaaataaaccaagacaagaatgccatagcagcagaaaattgatatctatcacataactttgtagta 40278759  T
Q  169 caatgtgatttaccagcttcatgcagaagatctat 203  Q
    ||||||||| |||| |||||||||||||| |||||    
T  40278758 caatgtgatctaccggcttcatgcagaaggtctat 40278724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 27655975 - 27655841
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||| | |  |||||| ||||| ||||||||||||||||||||||||||| || || ||||||||| ||||||||||||  |      
T  27655975 taaaaaccaaacattaaaaaaatatcaagctattgaaataaaccaagacaagaatgccatagcagctgaaaattgatatctatcacataactttgtagta 27655876  T
Q  169 caatgtgatttaccagcttcatgcagaagatctat 203  Q
    ||||||||| || ||||||||||||||||| ||||    
T  27655875 caatgtgatctatcagcttcatgcagaagacctat 27655841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 207
Target Start/End: Complemental strand, 33237482 - 33237344
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  || ||  ||||| |||||||||||||||||||||||||||||| || ||||||||| ||||||||||||  |      
T  33237482 taaaaaccaaacattaaaaagatatcaaactgttgaaataaaccaagacaagaatgccatagcagcagaaaattgatatctatcacataactttgtagta 33237383  T
Q  169 caatgtgatttaccagcttcatgcagaagatctataaca 207  Q
    ||||||||| ||||  ||||||||||||| |||||||||    
T  33237382 caatgtgatataccgacttcatgcagaaggtctataaca 33237344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 3021808 - 3021674
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  |||||  | ||| |||||||||||||||||||||||||||||| || ||||||||| |||||||||||   |      
T  3021808 taaaaaccaaacattaaaaagatatcaagctgttaaaataaaccaagacaagaatgccatagcagcagaaaattgatatctatcacataactttatagta 3021709  T
Q  169 caatgtgatttaccagcttcatgcagaagatctat 203  Q
    ||||||||| |||| |||||||||||||| |||||    
T  3021708 caatgtgatctaccggcttcatgcagaaggtctat 3021674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 43914114 - 43914215
Alignment:
Q  102 tgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtgatttaccagcttcatgcagaagatct 201  Q
    ||||| ||||||| ||||||||| |||||||||||| || ||||||||| ||||||||||||  |  ||||||||| || ||||||||||||||||||||    
T  43914114 tgaaataaaccaaaacaagaatgtcatagcagcagaaaattgatatctatcacataactttgtagtacaatgtgatctatcagcttcatgcagaagatct 43914213  T
Q  202 at 203  Q
    ||    
T  43914214 at 43914215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 37090186 - 37090052
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  ||| |  ||||| ||||||||||||||||| |||||||||||| || | ||||||| ||||||||||||  |      
T  37090186 taaaaaccaaacattaaaaagatatcaagttgttgaaataaaccaagacaagaatgtcatagcagcagaaaattaatatctatcacataactttgtagta 37090087  T
Q  169 caatgtgatttaccagcttcatgcagaagatctat 203  Q
    ||||||||| |||| |||||||||||||| |||||    
T  37090086 caatgtgatataccggcttcatgcagaaggtctat 37090052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 45149515 - 45149381
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| |||||  ||||||||| |  |||||  ||||| |||||||||||||||||||||| ||||||| || ||||||||| ||||||||||||  |      
T  45149515 taaaaaccaaacgttaaaaagatatcaagctgttgaaataaaccaagacaagaatgccataacagcagaaaattgatatctatcacataactttgtagta 45149416  T
Q  169 caatgtgatttaccagcttcatgcagaagatctat 203  Q
    ||||||||| |||| |||||||||| ||| |||||    
T  45149415 caatgtgatctaccggcttcatgcataaggtctat 45149381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 203
Target Start/End: Original strand, 22847318 - 22847413
Alignment:
Q  108 aaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtgatttaccagcttcatgcagaagatctat 203  Q
    |||||| |||||||||| |||||||||||| || ||||||||| ||||||||||||  |  ||||||||| |||| |||||||||||||| |||||    
T  22847318 aaaccatgacaagaatgtcatagcagcagaaaattgatatctatcacataactttgtagtacaatgtgatctaccggcttcatgcagaaggtctat 22847413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 1587561 - 1587427
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  || ||  ||||| |||||||||||||||||||||||||||| | || |||||| || ||||||||||||  |      
T  1587561 taaaaaccaaacattaaaaagatattaaactgttgaaataaaccaagacaagaatgccatagcagcaaaaaattgatatatatcacataactttgtagta 1587462  T
Q  169 caatgtgatttaccagcttcatgcagaagatctat 203  Q
    ||||||||| |||  |||||||||||||| |||||    
T  1587461 caatgtgatatactggcttcatgcagaaggtctat 1587427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 36951595 - 36951501
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttg 163  Q
    ||||| ||||| |||||||||| |  |||||  ||||| ||||||||||||||||||||||||||| || || ||||||||| ||||||||||||    
T  36951595 taaaaaccaaacattaaaaagatatcaagctgttgaaataaaccaagacaagaatgccatagcagcggaaaattgatatctatcacataactttg 36951501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 45969721 - 45969855
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||||||||| |||||||| | |  ||| |  ||||| |||||||||||||||||||||||||||||| || |||||| || |||||||||| |  |      
T  45969721 taaaatccaaacattaaaaaaatatcaagttgttgaaataaaccaagacaagaatgccatagcagcagaaaattgatatatatcacataacttcgtagta 45969820  T
Q  169 caatgtgatttaccagcttcatgcagaagatctat 203  Q
    ||||||||| |||| |||||||| ||||| |||||    
T  45969821 caatgtgatctaccggcttcatgtagaaggtctat 45969855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 197
Target Start/End: Complemental strand, 17754540 - 17754412
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  ||| |  ||||| |||||||||||||||||| |||| || ||| || ||||||||| ||||| ||||||  |      
T  17754540 taaaaaccaaacattaaaaagatatcaagttgttgaaataaaccaagacaagaatgcgatagaagtagaaaattgatatctatcacatcactttgtagta 17754441  T
Q  169 caatgtgatttaccagcttcatgcagaag 197  Q
    ||||||||| |||| ||||||||||||||    
T  17754440 caatgtgatctaccggcttcatgcagaag 17754412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 197
Target Start/End: Complemental strand, 19055860 - 19055732
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  ||| |  ||||| |||||||||||||||||| |||| || ||| || ||||||||| ||||| ||||||  |      
T  19055860 taaaaaccaaacattaaaaagatatcaagttgttgaaataaaccaagacaagaatgcgatagaagtagaaaattgatatctatcacatcactttgtagta 19055761  T
Q  169 caatgtgatttaccagcttcatgcagaag 197  Q
    ||||||||| |||| ||||||||||||||    
T  19055760 caatgtgatctaccggcttcatgcagaag 19055732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 33777914 - 33778048
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||| | |  |||||  ||||| ||||||||||||||||| ||||||| |||| || | ||||||| || |||||||||  |      
T  33777914 taaaaaccaaacattaaaaaaatatcaagctgttgaaataaaccaagacaagaatggcatagcatcagaaaaataatatctatcatataactttgtagta 33778013  T
Q  169 caatgtgatttaccagcttcatgcagaagatctat 203  Q
    || | |||| |||| |||||||||||||| |||||    
T  33778014 cattctgatctaccggcttcatgcagaaggtctat 33778048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 203
Target Start/End: Complemental strand, 29492691 - 29492596
Alignment:
Q  108 aaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtgatttaccagcttcatgcagaagatctat 203  Q
    |||||||||||| |||| ||||||| |||| || ||||||||| ||||||| ||||  |   |||||||| |||| ||||||||| |||| |||||    
T  29492691 aaaccaagacaataatgtcatagcaacagaaaattgatatctatcacataattttgtagtagaatgtgatctaccggcttcatgccgaaggtctat 29492596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 199
Target Start/End: Original strand, 9033976 - 9034106
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  ||| |  ||||| |||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||| ||     
T  9033976 taaaaaccaaacattaaaaagatatcaagttgttgaaataaaccaagacaagaatgccatagccgcagaaaattgatatctatcacataactttgcagga 9034075  T
Q  169 caatgtgatttaccagcttcatgcagaagat 199  Q
    ||||||||| |||| ||||||||||||||||    
T  9034076 caatgtgatctaccggcttcatgcagaagat 9034106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 202
Target Start/End: Complemental strand, 37328182 - 37328049
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  ||| |  ||||| ||||||||||||||||| |||||||||||| || ||||||||| ||||||||||||  |      
T  37328182 taaaaaccaaacattaaaaagatatcaagttgttgaaataaaccaagacaagaatgtcatagcagcagaaaattgatatctatcacataactttgtagta 37328083  T
Q  169 caatgtgatttaccagcttcatgcagaagatcta 202  Q
    ||||||||| ||||||||||||||||||| ||||    
T  37328082 caatgtgatctaccagcttcatgcagaaggtcta 37328049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 32536901 - 32536767
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  || ||  ||||| | |||||||||||||||||||||||||||| || ||||||||| ||||||||||||  |      
T  32536901 taaaaaccaaacattaaaaagatatcaaactgttgaaatataccaagacaagaatgccatagcagcagaaaattgatatctatcacataactttgtagta 32536802  T
Q  169 caatgtgatttaccagcttcatgcagaagatctat 203  Q
    ||||||||| |||| |||||||||||||| |||||    
T  32536801 caatgtgatctaccggcttcatgcagaaggtctat 32536767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 45217159 - 45217293
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  ||| |  ||||| |||||||||||||||||||||| ||||||| || ||||||||| ||||||||||||  |      
T  45217159 taaaaaccaaacattaaaaagatatcaagttgttgaaataaaccaagacaagaatgccataacagcagaaaattgatatctatcacataactttgtagta 45217258  T
Q  169 caatgtgatttaccagcttcatgcagaagatctat 203  Q
    ||||||||| |||| |||||||||||||| |||||    
T  45217259 caatgtgatataccggcttcatgcagaaggtctat 45217293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 201
Target Start/End: Complemental strand, 27134992 - 27134860
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  || ||  ||||| |||| |||||||||||| |||||||||||| |  ||||||||| ||||||||||||| ||     
T  27134992 taaaaaccaaacattaaaaagatatcaaacttttgaaataaactaagacaagaatgtcatagcagcagaaagttgatatctatcacataactttgcagga 27134893  T
Q  169 caatgtgatttaccagcttcatgcagaagatct 201  Q
    ||||| ||| |||| ||||||||||||||||||    
T  27134892 caatgcgatctaccggcttcatgcagaagatct 27134860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 44744019 - 44744114
Alignment:
Q  102 tgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtgatttaccagcttcatgcagaag 197  Q
    ||||| ||||||||||||||||| |||||||||||| || ||||||||| ||||||||||||  |  ||||||||| |||| ||||||||||||||    
T  44744019 tgaaataaaccaagacaagaatgtcatagcagcagaaaattgatatctatcacataactttgtagtacaatgtgatctaccggcttcatgcagaag 44744114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 7875395 - 7875301
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttg 163  Q
    ||||| ||||| |||||||||| |  |||||  ||||| |||||||||||||||||||||||||| ||| || | ||||||| ||||||||||||    
T  7875395 taaaaaccaaacattaaaaagatatcaagcttttgaaataaaccaagacaagaatgccatagcagtagaaaatttatatctatcacataactttg 7875301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 52580033 - 52580134
Alignment:
Q  102 tgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtgatttaccagcttcatgcagaagatct 201  Q
    ||||| ||| ||||||||||||| ||||| |||| | || ||||||||| ||||||||||||  |  || ||||||||||| |||||||||||||| |||    
T  52580033 tgaaataaatcaagacaagaatgtcatagtagcaaaaaattgatatctatcacataactttgtagtacagtgtgatttaccggcttcatgcagaaggtct 52580132  T
Q  202 at 203  Q
    ||    
T  52580133 at 52580134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 30728492 - 30728631
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  ||| | |||||| |||||||||||| ||||||||||||||||| || ||||||||| ||||||||||||  |      
T  30728492 taaaaaccaaatattaaaaagatatcaagttgatgaaataaaccaagacaataatgccatagcagcagaaaattgatatctatcacataactttgtagta 30728591  T
Q  169 caatgtgatttaccagcttcatgcagaagatctataacac 208  Q
    ||||||||| |||| |||||||||||||| ||||| ||||    
T  30728592 caatgtgatctaccggcttcatgcagaaggtctatgacac 30728631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 247
Target Start/End: Original strand, 33583285 - 33583473
Alignment:
Q  59 acagagaaggtaaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataa 158  Q
    |||||||||| || | |||||| ||||  |||||||||||| ||||||||||||||| |||||  |||||||||||||| |  || ||||||| ||||||    
T  33583285 acagagaaggaaatagccaaaagttaattagacaagaagctgatgaaagaaaccaagccaagatggccatagcagcagatatttggtatctactacataa 33583384  T
Q  159 ctttgccgggcaatgtgatttaccagcttcatgcagaagatctataacacttgctgcggaacatgctgcagctaatgagagatatgaca 247  Q
     ||| | |||||||  |||||| | ||   | |||  |||||| | ||||| || |  |||||||||||||||||| ||||||||||||    
T  33583385 attttctgggcaataggatttatcggcactacgcaacagatctgtgacactggcagttgaacatgctgcagctaataagagatatgaca 33583473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 197
Target Start/End: Complemental strand, 34055773 - 34055645
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  |||||  ||||| |||||||||||||||||||||||||||||| ||  |||||||| ||||||||||||  |      
T  34055773 taaaaaccaaacattaaaaagatatcaagctgttgaaataaaccaagacaagaatgccatagcagcagaaaatcgatatctatcacataactttgtggta 34055674  T
Q  169 caatgtgatttaccagcttcatgcagaag 197  Q
    |||||| || |||  ||||||||||||||    
T  34055673 caatgtaatatacaggcttcatgcagaag 34055645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 12764803 - 12764681
Alignment:
Q  81 attaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtgattta 180  Q
    |||||||||| |  |||||  ||||| ||||||||||||||||| |||||||||||| || ||||||||| ||||||||||||     ||||||||| ||    
T  12764803 attaaaaagatatcaagctgttgaaataaaccaagacaagaatgtcatagcagcagaaaattgatatctatcacataactttgtaatacaatgtgatata 12764704  T
Q  181 ccagcttcatgcagaagatctat 203  Q
    ||  ||||||||||||| |||||    
T  12764703 ccgacttcatgcagaaggtctat 12764681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 41393262 - 41393168
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttg 163  Q
    ||||| ||||| |||||||||| |  |||||  ||||| ||||||||||||||||||||||| |||||| || ||||||||| ||||||||||||    
T  41393262 taaaaaccaaatattaaaaagatatcaagctgttgaaataaaccaagacaagaatgccatagtagcagaaaattgatatctatcacataactttg 41393168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 41576410 - 41576312
Alignment:
Q  102 tgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtgatttaccagcttcatgcagaagatc 200  Q
    ||||| |||||||||||||||||||||| ||||| | || ||||||||| |||||||||||   |  ||||||||| |||| |||||||||||||||||    
T  41576410 tgaaataaaccaagacaagaatgccatatcagcaaaaaattgatatctatcacataactttttagtacaatgtgatataccggcttcatgcagaagatc 41576312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 41542665 - 41542766
Alignment:
Q  102 tgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtgatttaccagcttcatgcagaagatct 201  Q
    ||||| ||||||||| |||||||||||||||||| | || ||||||||| ||||||||||||  |  |||||||||||||  ||||||||| |||| |||    
T  41542665 tgaaataaaccaagataagaatgccatagcagcataaaattgatatctatcacataactttgtagtacaatgtgatttactggcttcatgctgaaggtct 41542764  T
Q  202 at 203  Q
    ||    
T  41542765 at 41542766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 39584068 - 39584140
Alignment:
Q  131 cagcagacaactgatatctaccacataactttgccgggcaatgtgatttaccagcttcatgcagaagatctat 203  Q
    ||||||| || ||||||||| ||||||||||||  |  ||||||||| |||| |||||||||||||| |||||    
T  39584068 cagcagaaaattgatatctatcacataactttgtagtacaatgtgatataccggcttcatgcagaaggtctat 39584140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 203
Target Start/End: Complemental strand, 40260290 - 40260163
Alignment:
Q  76 caaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtg 175  Q
    |||| |||||||||| |  |||||  ||||| ||| |||||||||||||||||||||||||| || ||||||||| ||||||||||||  |  |||||||    
T  40260290 caaacattaaaaagatatcaagctgttgaaataaatcaagacaagaatgccatagcagcagaaaattgatatctatcacataactttgtagtacaatgtg 40260191  T
Q  176 atttaccagcttcatgcagaagatctat 203  Q
    || |||| |||||||||||||| |||||    
T  40260190 atataccggcttcatgcagaaggtctat 40260163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 28294101 - 28293967
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  |||||  ||||| ||||||||| ||||||| |||||||||||| || ||||||||| ||||||||||||  |      
T  28294101 taaaaaccaaacattaaaaagatatcaagctgttgaaataaaccaagataagaatgtcatagcagcagaaaattgatatctatcacataactttgtagca 28294002  T
Q  169 caatgtgatttaccagcttcatgcagaagatctat 203  Q
    ||||||||| |||| |||||||||||||| |||||    
T  28294001 caatgtgatataccggcttcatgcagaaggtctat 28293967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 4236827 - 4236728
Alignment:
Q  102 tgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtgatttaccagcttcatgcagaagatct 201  Q
    ||||| ||||||||||||||||| |||||||||||| || ||||||||| |||||||||||||  | || |||||| ||||  |||||||| ||||||||    
T  4236827 tgaaataaaccaagacaagaatgtcatagcagcagaaaattgatatctatcacataactttgcacgacagtgtgatctaccgacttcatgcggaagatct 4236728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 33210993 - 33210859
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  |||||  ||||| | |||||||||||||||  ||||||||||| || ||||||||| ||||||||||||  |      
T  33210993 taaaaaccaaacattaaaaagatatcaagctgttgaaatacaccaagacaagaatgttatagcagcagaaaattgatatctatcacataactttgtagta 33210894  T
Q  169 caatgtgatttaccagcttcatgcagaagatctat 203  Q
    ||||||||| || | |||||||||||||| |||||    
T  33210893 caatgtgatatatcggcttcatgcagaaggtctat 33210859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 193
Target Start/End: Complemental strand, 35435101 - 35434984
Alignment:
Q  76 caaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtg 175  Q
    |||| |||||||||| |  |||||  ||||| ||||||||||||||||| || |||||| || || ||||||||| ||||||||||||  |  |||||||    
T  35435101 caaacattaaaaagatatcaagctgttgaaataaaccaagacaagaatgtcacagcagcggaaaattgatatctatcacataactttgtagtacaatgtg 35435002  T
Q  176 atttaccagcttcatgca 193  Q
    ||||||| ||||||||||    
T  35435001 atttaccggcttcatgca 35434984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 41798704 - 41798791
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacat 156  Q
    ||||| ||||| |||||||||| |  |||||  ||||| ||||||||||||||||| |||||||||||| || ||||||||| |||||    
T  41798704 taaaaaccaaacattaaaaagatatcaagctgttgaaataaaccaagacaagaatgtcatagcagcagaaaattgatatctatcacat 41798791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 21366919 - 21366841
Alignment:
Q  116 acaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtgatttaccagcttcatgcagaa 196  Q
    |||||||||||||||||||| | || |||||| |  ||||||||||||  |  ||||||||| |||| |||||||||||||    
T  21366919 acaagaatgccatagcagcaaaaaattgatatat--cacataactttgtagtacaatgtgatctaccggcttcatgcagaa 21366841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 201
Target Start/End: Original strand, 8590057 - 8590189
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| |||||||||||||| | |  |||||| ||||| ||||||||||||||||| |||||||| ||| |  ||||||||| ||||||||||||| ||     
T  8590057 taaaaaccaaaaattaaaaatatatcaagctattgaaataaaccaagacaagaatgtcatagcagtagaaagttgatatctatcacataactttgcagga 8590156  T
Q  169 caatgtgatttaccagcttcatgcagaagatct 201  Q
     ||| |||| |||| ||||||| ||||||||||    
T  8590157 taatatgatctaccggcttcatccagaagatct 8590189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 26582595 - 26582729
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  |||||  ||||| | ||||||||||||||| |||| || |||| || ||||||||| ||||||||||||  |      
T  26582595 taaaaaccaaacattaaaaagatatcaagctgttgaaatacaccaagacaagaatgtcataacaacagaaaattgatatctatcacataactttgtagta 26582694  T
Q  169 caatgtgatttaccagcttcatgcagaagatctat 203  Q
    ||||||||| |||| |||||||| ||||| |||||    
T  26582695 caatgtgatataccggcttcatgtagaaggtctat 26582729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 203
Target Start/End: Complemental strand, 1799203 - 1799110
Alignment:
Q  110 accaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtgatttaccagcttcatgcagaagatctat 203  Q
    ||||||||||||||| ||||| |||||| || ||||||||| ||||||||||||  |  | ||||||| || | |||||||||||||| |||||    
T  1799203 accaagacaagaatgtcatagtagcagaaaattgatatctatcacataactttgtagtaccatgtgatatatcggcttcatgcagaaggtctat 1799110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 76 - 203
Target Start/End: Original strand, 40033739 - 40033866
Alignment:
Q  76 caaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtg 175  Q
    |||| |||||||||| |  |||||  ||||| |||| ||||||||||||||||||||| ||| || ||||||||| ||||||||||||  |  | |||||    
T  40033739 caaacattaaaaagatatcaagctgttgaaataaacaaagacaagaatgccatagcagtagaaaattgatatctatcacataactttgtagtaccatgtg 40033838  T
Q  176 atttaccagcttcatgcagaagatctat 203  Q
    ||||||| |||||||||||||| |||||    
T  40033839 atttaccggcttcatgcagaaggtctat 40033866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 201
Target Start/End: Original strand, 220185 - 220311
Alignment:
Q  76 caaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacat-aactttgccgggcaatgt 174  Q
    |||| |||||||||| |  |||||  ||||| ||||||||||||||||| |||||||||||| || ||||||||| ||||| || ||||| || | ||||    
T  220185 caaacattaaaaagatatcaagctgttgaaataaaccaagacaagaatgtcatagcagcagaaaattgatatctatcacataaagtttgcaggacgatgt 220284  T
Q  175 gatttaccagcttcatgcagaagatct 201  Q
    ||| |||| ||||||||||||||||||    
T  220285 gatctaccggcttcatgcagaagatct 220311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 36928117 - 36928016
Alignment:
Q  102 tgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtgatttaccagcttcatgcagaagatct 201  Q
    ||||| ||||||||||||||||| |||||||||||| || | ||||||| ||||||||||||  |  ||||||||| |||| |||||||||||||| |||    
T  36928117 tgaaataaaccaagacaagaatgtcatagcagcagaaaattaatatctatcacataactttgtagtacaatgtgatataccggcttcatgcagaaggtct 36928018  T
Q  202 at 203  Q
    ||    
T  36928017 at 36928016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 42987449 - 42987550
Alignment:
Q  102 tgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtgatttaccagcttcatgcagaagatct 201  Q
    ||||| ||||||||||||||||| |||||||||| | || ||||||||| ||||||||||||  |  ||||||||| |||| |||||||||||||| |||    
T  42987449 tgaaataaaccaagacaagaatgtcatagcagcataaaattgatatctatcacataactttgtagtacaatgtgatctaccggcttcatgcagaaggtct 42987548  T
Q  202 at 203  Q
    ||    
T  42987549 at 42987550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 197
Target Start/End: Complemental strand, 54445230 - 54445135
Alignment:
Q  102 tgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtgatttaccagcttcatgcagaag 197  Q
    ||||| |||||||||||||||||||||||||||||| || |||||||||  |||||||||||  |  ||||||||| |||| ||| ||||||||||    
T  54445230 tgaaataaaccaagacaagaatgccatagcagcagaaaattgatatctatgacataactttgtagtacaatgtgatctaccggctgcatgcagaag 54445135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 39632988 - 39633070
Alignment:
Q  108 aaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtgatttaccagcttcat 190  Q
    |||||||||||||||||||||| ||||||| || ||||||||| ||||||||||||  |  ||||||||| ||||||||||||    
T  39632988 aaaccaagacaagaatgccataacagcagaaaattgatatctatcacataactttgtagtacaatgtgatctaccagcttcat 39633070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 197
Target Start/End: Complemental strand, 38392744 - 38392628
Alignment:
Q  81 attaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtgattta 180  Q
    |||||||||| |  ||||| |||||  | ||||||||||||||| |||||||||||| || ||||||||| ||||||||||||  |  ||||||||| ||    
T  38392744 attaaaaagatatcaagctgatgaattataccaagacaagaatgtcatagcagcagaaaattgatatctatcacataactttgtagtacaatgtgatcta 38392645  T
Q  181 ccagcttcatgcagaag 197  Q
    || ||||||| ||||||    
T  38392644 ccggcttcatccagaag 38392628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 197
Target Start/End: Original strand, 1565317 - 1565444
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  ||| |  ||||| ||| |||||||||||| ||||| ||||||| || ||||||||| ||||||||||||  |      
T  1565317 taaaaaccaaacattaaaaagatatcaagttgttgaaataaatcaagacaagaataccataacagcaga-aattgatatctatcacataactttgtagta 1565415  T
Q  169 caatgtgatttaccagcttcatgcagaag 197  Q
    |||||||||||||  ||||||||||||||    
T  1565416 caatgtgatttactggcttcatgcagaag 1565444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 46614176 - 46614267
Alignment:
Q  108 aaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtgatttaccagcttcatgcagaagat 199  Q
    |||||||||||||||||||| | ||||||| || ||||||||| || |||||||||  || ||||||||| ||   ||||||||||||||||    
T  46614176 aaaccaagacaagaatgccacaacagcagaaaattgatatctatcatataactttgtaggacaatgtgatctattggcttcatgcagaagat 46614267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 40278966 - 40278876
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataac 159  Q
    ||||| ||||| |||||||||| |  ||| |  ||||| ||| |||||||||||||||||||||||||| || |||| |||| ||||||||    
T  40278966 taaaaaccaaacattaaaaagatatcaagttgttgaaataaatcaagacaagaatgccatagcagcagaaaattgatttctatcacataac 40278876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 76 - 203
Target Start/End: Original strand, 10574469 - 10574596
Alignment:
Q  76 caaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtg 175  Q
    |||| |||||||||| |  || || |||||| |||||||||||| |||| |||||||||||| || ||||||||| ||||||||||||  |  |||||||    
T  10574469 caaacattaaaaagatatcaaactgatgaaataaaccaagacaataatgtcatagcagcagaaaattgatatctatcacataactttgtagtacaatgtg 10574568  T
Q  176 atttaccagcttcatgcagaagatctat 203  Q
    || |||| |||||||||||||| |||||    
T  10574569 atctaccggcttcatgcagaaggtctat 10574596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 5438750 - 5438616
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||||||||| |||||||||| |  ||| |  ||||| |||| |||||||||||| |||||||||||  || ||||||||| ||||||||||||  |      
T  5438750 taaaatccaaacattaaaaagatatcaagttgttgaaataaactaagacaagaatgtcatagcagcaggaaattgatatctatcacataactttgtagta 5438651  T
Q  169 caatgtgatttaccagcttcatgcagaagatctat 203  Q
    ||||||||| |||| |||||||||||||| |||||    
T  5438650 caatgtgatctaccggcttcatgcagaaggtctat 5438616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 196
Target Start/End: Original strand, 27481662 - 27481789
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  ||||   ||||| |||| ||||||||||||||||||||||||| || ||||||||| ||||||||||||  |      
T  27481662 taaaaaccaaacattaaaaagatatcaagccgttgaaataaactaagacaagaatgccatagcagcagaaaattgatatctatcacataactttgtagta 27481761  T
Q  169 caatgtgatttaccagcttcatgcagaa 196  Q
    ||||||||  |||| |||||||||||||    
T  27481762 caatgtgaactaccggcttcatgcagaa 27481789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 18059883 - 18060017
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    ||||| ||||| |||||||||| |  ||||   ||||| ||||||||||||||||||||||| |||||| || | ||||||| ||||||||||||  |      
T  18059883 taaaaaccaaatattaaaaagatatcaagccgttgaaataaaccaagacaagaatgccatagtagcagaaaattaatatctatcacataactttgtagta 18059982  T
Q  169 caatgtgatttaccagcttcatgcagaagatctat 203  Q
    |||||| || || | |||||||||||||| |||||    
T  18059983 caatgtaatctatcggcttcatgcagaaggtctat 18060017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 41726481 - 41726575
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttg 163  Q
    ||||| ||||| |||||||||| |  ||| |  ||||| |||||||||||||||||||||||||||||| ||  |||||||| ||||||||||||    
T  41726481 taaaacccaaacattaaaaagatatcaagttgttgaaataaaccaagacaagaatgccatagcagcagaaaatggatatctatcacataactttg 41726575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 43207546 - 43207445
Alignment:
Q  102 tgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccgggcaatgtgatttaccagcttcatgcagaagatct 201  Q
    ||||| ||||||||||||||||| ||||||| || | || ||||||||| ||||||||||||  |  ||||||||| || | |||||||||||||| |||    
T  43207546 tgaaataaaccaagacaagaatgtcatagcaacaaaaaattgatatctatcacataactttgtagtacaatgtgatatatcggcttcatgcagaaggtct 43207447  T
Q  202 at 203  Q
    ||    
T  43207446 at 43207445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 6081361 - 6081454
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttg 163  Q
    ||||| ||||| |||||||||| |  |||||  ||||| | |||||||||| ||||||||||||||| | || ||||||||| | ||||||||||    
T  6081361 taaaaaccaaacattaaaaagatatcaagctcttgaaatacaccaagacaaaaatgccatagcagca-aaaattgatatctatcccataactttg 6081454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0474 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 196
Target Start/End: Complemental strand, 12857 - 12730
Alignment:
Q  69 taaaatccaaaaattaaaaagacaagaagctaatgaaagaaaccaagacaagaatgccatagcagcagacaactgatatctaccacataactttgccggg 168  Q
    |||||| |||| |||||||||| |  |||||  ||||| | ||||||||||||||| ||||||||| |  || |||||| || ||||||||||||  |      
T  12857 taaaattcaaacattaaaaagatatcaagctgttgaaatagaccaagacaagaatgtcatagcagccggaaattgatatgtatcacataactttgtagta 12758  T
Q  169 caatgtgatttaccagcttcatgcagaa 196  Q
    ||||||||| ||||  ||||||||||||    
T  12757 caatgtgatataccgacttcatgcagaa 12730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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