View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13773_high_2 (Length: 687)
Name: NF13773_high_2
Description: NF13773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13773_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 249 - 677
Target Start/End: Complemental strand, 5812357 - 5811929
Alignment:
| Q |
249 |
gcggtgatgcaaatcttccttgtccgtggagtcggcattcaataaaaaaggacagtaaagtgatcaccccaggtgcaaaaaatcatgctagagctaaagg |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5812357 |
gcggtgatgcaaatcttccttgtccgtggagttggcattcaataaaaaaggacaataaagtgatcaccccaggtgcaaaaaatcatgctagagctaaagg |
5812258 |
T |
|
| Q |
349 |
gcaagaagacaattctaaggacattgatgacctgaagcttcaagattttcttcagttcatgcaaccttgcgcaaagtctaagctgtgggcaaacgaaact |
448 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5812257 |
gcaagaagacaattctaaagacattgatgacctgaagcttcaagattttcttcaggtcatgcaacctcgcgcaaagtctaagctgtgggcaaacgaaact |
5812158 |
T |
|
| Q |
449 |
acagttgtatccaatgatggtaacaaccaagcaacattgaataaggagaccaacggtacatcaattgcaaactatcctatcttaagtgacagacaagtag |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5812157 |
acagttgtatccaatgatggtaacaaccaagcaacattgaataaggagaccaacggtacatcaattgcaaactatcctatcttaagtgacagacaagtag |
5812058 |
T |
|
| Q |
549 |
ttggattaccaaataatcccgaatctgaaaagtcacgtgagcttaagcatgatggagtgatgtctgatattgattatttcaagaataaagtgacaacaga |
648 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5812057 |
ttggattaccaaataatcccgaatctgacaagtcacgtgagcttaatcatgatggagtgatgtctgatattgattatttcaagaataaagtgacaacaga |
5811958 |
T |
|
| Q |
649 |
ttggtccgattctgaaagcagtgatgatg |
677 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
5811957 |
ttggtccgattctgaaagcagtgatgatg |
5811929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 5812674 - 5812440
Alignment:
| Q |
19 |
ttctgcatcgcgcacttctctttctctatttgcttctgtttcagtgagaatatttactacgtctttgaacattctaatagtttatcagttgtttacttgt |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5812674 |
ttctgcatcgtgcacttctctttctctatttgcttctgtttcagtgagaatatttactacgtctttgaacattctaatagtttatcagttgtttacttgt |
5812575 |
T |
|
| Q |
119 |
tagattaaagtgataaaatgatatttatatcaatggaacttttgtataataattgattcttttatttttcgtagacacatttgttgccacctgtgtctac |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5812574 |
tagattaaagtgataaaatgatatttatatcaatggaacttttgtataataattgattcttttatttttcatagacacatttgttgccacctgtgtctac |
5812475 |
T |
|
| Q |
219 |
tatactagaaggagccatgtaagtgcaaatgcggt |
253 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
5812474 |
tatactagaaggagccatgtaagtgcaaatgcggt |
5812440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 251 - 677
Target Start/End: Complemental strand, 37743925 - 37743499
Alignment:
| Q |
251 |
ggtgatgcaaatcttccttgtccgtggagtcggcattcaataaaaaaggacagtaaagtgatcaccccaggtgcaaaaaatcatgctagagctaaagggc |
350 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||| |||||||||| ||||||||||||| ||| || | ||||||||||||||||| | | |
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| T |
37743925 |
ggtgatgcaaatcttcctcgtccgtggagtcgacattcaacaaaaaaggacgataaagtgatcaccacagatgttagcaatcatgctagagctaaggaac |
37743826 |
T |
|
| Q |
351 |
aagaagacaattctaaggacattgatgacctgaagcttcaagattttcttcagttcatgcaaccttgcgcaaagtctaagctgtgggcaaacgaaactac |
450 |
Q |
| |
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| ||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||| | |||| |||||||||||||||||| || ||| | |
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|
| T |
37743825 |
atgaagacaattctatggacattgatgacccaaagcttcaagattttcttcaggtcatgcaacctcgggcaatgtctaagctgtgggcaaatgatacttc |
37743726 |
T |
|
| Q |
451 |
agttgtatccaatgatggtaacaaccaagcaacattgaataaggagaccaacggtacatcaattgcaaactatcctatcttaagtgacagacaagtagtt |
550 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||| | |||||| |||||||||| ||||||||||||| ||| ||| |||| | |
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|
| T |
37743725 |
agttgtatccaatgatggtaacaaccaaccaacactgaataaggagaccgaaagtacattaattgcaaaccatcctatcttaagcgactcacatgtagat |
37743626 |
T |
|
| Q |
551 |
ggattaccaaataatcccgaatctgaaaagtcacgtgagcttaagcatgatggagtgatgtctgatattgattatttcaagaataaagtgacaacagatt |
650 |
Q |
| |
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| ||||||||||| || |||| || ||||| ||||| |||||||||||||||| || |||||||| ||||||||||||| |||||||||||| || | |
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| T |
37743625 |
gagttaccaaataaccctaaatccgacaagtcgcgtgatattaagcatgatggagtaatttctgatatggattatttcaagagtaaagtgacaacggagt |
37743526 |
T |
|
| Q |
651 |
ggtccgattctgaaagcagtgatgatg |
677 |
Q |
| |
|
|||| |||||||||||||||||||||| |
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| T |
37743525 |
ggtctgattctgaaagcagtgatgatg |
37743499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 251 - 677
Target Start/End: Original strand, 38601196 - 38601622
Alignment:
| Q |
251 |
ggtgatgcaaatcttccttgtccgtggagtcggcattcaataaaaaaggacagtaaagtgatcaccccaggtgcaaaaaatcatgctagagctaaagggc |
350 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||| |||||| | || |||||||||||||||| || || |||||||||||||||||||| | |
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|
| T |
38601196 |
ggtgatgcaaatcttcctcgtccgtggagtcaacattcaacaaaaaaagtcaataaagtgatcaccccacatgttaacaatcatgctagagctaaaggac |
38601295 |
T |
|
| Q |
351 |
aagaagacaattctaaggacattgatgacctgaagcttcaagattttcttcagttcatgcaaccttgcgcaaagtctaagctgtgggcaaacgaaactac |
450 |
Q |
| |
|
| ||||||||||||| ||| |||||||||| || |||||||||||||||||| ||||||||||| | |||| |||||||||||||||||| || ||| | |
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|
| T |
38601296 |
atgaagacaattctatggaaattgatgacccaaaacttcaagattttcttcaggtcatgcaacctcgggcaatgtctaagctgtgggcaaatgatacttc |
38601395 |
T |
|
| Q |
451 |
agttgtatccaatgatggtaacaaccaagcaacattgaataaggagaccaacggtacatcaattgcaaactatcctatcttaagtgacagacaagtagtt |
550 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| |||||||| ||||||||||||| ||| |||||||| | |
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|
| T |
38601396 |
agttgtatccaatgatggtaacaaccaagcaacattgaataaggagaccgaaaggacatcagttgcaaaccatcctatcttaagcgactcacaagtagat |
38601495 |
T |
|
| Q |
551 |
ggattaccaaataatcccgaatctgaaaagtcacgtgagcttaagcatgatggagtgatgtctgatattgattatttcaagaataaagtgacaacagatt |
650 |
Q |
| |
|
| ||||||||| || || |||| || ||| |||||||||||||||||||||||| || |||||||| ||||||||||||| ||| | ||||| || | |
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|
| T |
38601496 |
gaattaccaaaaaaccctaaatccgataagaaacgtgagcttaagcatgatggagtaatctctgatatggattatttcaagagcaaattaacaacggagt |
38601595 |
T |
|
| Q |
651 |
ggtccgattctgaaagcagtgatgatg |
677 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
38601596 |
ggtctgattctgaaagcagtgatgatg |
38601622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 251 - 677
Target Start/End: Complemental strand, 37765120 - 37764694
Alignment:
| Q |
251 |
ggtgatgcaaatcttccttgtccgtggagtcggcattcaataaaaaaggacagtaaagtgatcaccccaggtgcaaaaaatcatgctagagctaaagggc |
350 |
Q |
| |
|
|||||||||||||||||| | || |||||||| ||||||| |||||| |||| ||||| | ||||||||| || || ||| ||||||||||||||| | |
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|
| T |
37765120 |
ggtgatgcaaatcttcctcgaccatggagtcgacattcaagaaaaaaagacactaaagcgttcaccccagatgtcaacaattgtgctagagctaaaggac |
37765021 |
T |
|
| Q |
351 |
aagaagacaattctaaggacattgatgacctgaagcttcaagattttcttcagttcatgcaaccttgcgcaaagtctaagctgtgggcaaacgaaactac |
450 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||||||| || | |||| |||||||||||||||||| |||||| | |
|
|
| T |
37765020 |
atgaagacaattctatggacattgatgacctgaagcttcgagaatttcttcaggtcatgcaatctcgagcaacgtctaagctgtgggcaaatgaaacttc |
37764921 |
T |
|
| Q |
451 |
agttgtatccaatgatggtaacaaccaagcaacattgaataaggagaccaacggtacatcaattgcaaactatcctatcttaagtgacagacaagtagtt |
550 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||| |||| | | |||||| |||||||| ||||||||||||| ||| |||| ||| | |
|
|
| T |
37764920 |
agttgcatccaatgatggtagcaaccaagcaacattgaataagaagactgaaagaacatcagttgcaaaccatcctatcttaagcgactcacaattagat |
37764821 |
T |
|
| Q |
551 |
ggattaccaaataatcccgaatctgaaaagtcacgtgagcttaagcatgatggagtgatgtctgatattgattatttcaagaataaagtgacaacagatt |
650 |
Q |
| |
|
| ||||||||||| || |||| | ||| |||||||||||||| ||||||||| || ||||||| ||||||||||||| |||||||||||| || | |
|
|
| T |
37764820 |
gagttaccaaataaccctaaatccaataagaaacgtgagcttaagcctgatggagtaatccctgatatggattatttcaagagtaaagtgacaacggagt |
37764721 |
T |
|
| Q |
651 |
ggtccgattctgaaagcagtgatgatg |
677 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
37764720 |
ggtctgattctgaaagcagtgatgatg |
37764694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 37744635 - 37744588
Alignment:
| Q |
109 |
gtttacttgttagattaaagtgataaaatgatatttatatcaatggaa |
156 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||||||||||||||||| |
|
|
| T |
37744635 |
gtttacttgttagattatagtgagaaaaggatatttatatcaatggaa |
37744588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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