View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13773_high_23 (Length: 253)
Name: NF13773_high_23
Description: NF13773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13773_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 28585213 - 28584990
Alignment:
| Q |
16 |
acagagcaacttccaaacttcatgaaaatagctttgaatgcactttacgacatcaccaataattttgctgaaatggtctacaaaaagcatggattcaacc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585213 |
acagagcaacttccaaacttcatgaaaatagctttgaatgcactttacgacattaccaataattttgctgaaatggtctacaaaaagcatggattcaacc |
28585114 |
T |
|
| Q |
116 |
ctatagacacacttaaaaaatcggtacactaactagcc--nnnnnnnnnnnnnnccatcatatatataaattatgttttcaaatggctgagtatatataa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585113 |
ctatagacacacttaaaaaatcggtacactaactagcctttttttttcttttttccatcatatatataaattatgttttcaaatggctgagtatatataa |
28585014 |
T |
|
| Q |
214 |
aattatttgcgtgaaacagtgggt |
237 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
28585013 |
aattatttgcgtgaaacagtgggt |
28584990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 28573981 - 28573848
Alignment:
| Q |
13 |
ggtacagagcaacttccaaacttcatgaaaatagctttgaatgcactttacgacatcaccaataattttgctgaaatggtctacaaaaagcatggattca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
28573981 |
ggtacagagcaacttccaaacttcatgaaaatagctttgaatgcactttacgacattaccaatagttttgctgaaatggtctacaaaaagcatggattta |
28573882 |
T |
|
| Q |
113 |
accctatagacacacttaaaaaatcggtacacta |
146 |
Q |
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||||||||||||| || ||||||||||||||||| |
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| T |
28573881 |
accctatagacactctcaaaaaatcggtacacta |
28573848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 26315125 - 26314988
Alignment:
| Q |
16 |
acagagcaacttccaaacttcatgaaaatagctttgaatgcactttacgacatcaccaataattttgctgaaatggtctacaaaaagcatggattcaacc |
115 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||| || || | |||||||||||| |||||||||||||||||||||||||||| |
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| T |
26315125 |
acagagcaacttccaaacttcatgaaaatatctttgaatgcactttacgaaattactagtaattttgctgatatggtctacaaaaagcatggattcaacc |
26315026 |
T |
|
| Q |
116 |
ctatagacacacttaaaaaatcggtacactaactagcc |
153 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| |
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| T |
26315025 |
ctatagacactcttaaaaaatcggtacactaactagcc |
26314988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 150
Target Start/End: Complemental strand, 28567233 - 28567099
Alignment:
| Q |
16 |
acagagcaacttccaaacttcatgaaaatagctttgaatgcactttacgacatcaccaataattttgctgaaatggtctacaaaaagcatggattcaacc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||| |||||||| ||||||||||| |||| |
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| T |
28567233 |
acagagcaacttccaaacttcatgaaaatatctttgaatgcactttacgacattaccaataaatttgctgaaaatgtctacaagaagcatggatttaacc |
28567134 |
T |
|
| Q |
116 |
ctatagacacacttaaaaaatcggtacactaacta |
150 |
Q |
| |
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||||||||||||| |||||||||||||||| |||| |
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| T |
28567133 |
ctatagacacactcaaaaaatcggtacacttacta |
28567099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 20616319 - 20616242
Alignment:
| Q |
70 |
accaataattttgctgaaatggtctacaaaaagcatggattcaaccctatagacacacttaaaaaatcggtacactaa |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| |
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| T |
20616319 |
accaataattttgctgaaatggtctacaaaaagcatggattcaaccctatagatacacttaaaatatcggtaaactaa |
20616242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 26314974 - 26314905
Alignment:
| Q |
169 |
catcatatata--taaattatgttttcaaatggctgagtatatat-aaaattatttgcgtgaaacagtgg |
235 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||| | ||||| ||||| |||||||||||| |
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| T |
26314974 |
catcatatatacataaattattctttcaaatggctgagtatatgtaaaaatgatttgggtgaaacagtgg |
26314905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 28567082 - 28567017
Alignment:
| Q |
169 |
catcatatatataaattatgtttt-caaatggctgagtatatataaaattatttgcgtgaaacagtgg |
235 |
Q |
| |
|
||||||||||||||||||| |||| |||| |||||| |||||| || ||||||||||||||||||| |
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| T |
28567082 |
catcatatatataaattatttttttcaaacggctgattatataataa--tatttgcgtgaaacagtgg |
28567017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 24070661 - 24070447
Alignment:
| Q |
19 |
gagcaacttccaaacttcatgaaaatagctttgaatgcactttacgacatcaccaataattttgctgaaatggtctacaaaaagcatggattcaacccta |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
24070661 |
gagcaacttccaaacttcatgaaaatatctttgaatgcactttacgacattaccaataattttgctgaaaaggtctacaagaagcatggattcaacccta |
24070562 |
T |
|
| Q |
119 |
tagacacacttaaaaaatcggtacactaactagccnnnnnnnnnnnnnnccatcatatatataaattatgttttcaaatggctgagtatatataaaatta |
218 |
Q |
| |
|
||||||| ||||||||||||||| |||||||| || ||||||||||||||||| |||||||||| |||||| ||||||||| || |
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| T |
24070561 |
tagacactcttaaaaaatcggtatactaactaaccgtcttttatatttt--atcatatatataaattaatttttcaaatgactgagtctatataaaacta |
24070464 |
T |
|
| Q |
219 |
tttgcgtgaaacagtgg |
235 |
Q |
| |
|
|||| |||||||||||| |
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|
| T |
24070463 |
tttgggtgaaacagtgg |
24070447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 24080075 - 24080289
Alignment:
| Q |
19 |
gagcaacttccaaacttcatgaaaatagctttgaatgcactttacgacatcaccaataattttgctgaaatggtctacaaaaagcatggattcaacccta |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
24080075 |
gagcaacttccaaacttcatgaaaatatctttgaatgcactttacgacattaccaataattttgctgaaaaggtctacaagaagcatggattcaacccta |
24080174 |
T |
|
| Q |
119 |
tagacacacttaaaaaatcggtacactaactagccnnnnnnnnnnnnnnccatcatatatataaattatgttttcaaatggctgagtatatataaaatta |
218 |
Q |
| |
|
||||||| |||||||||| |||| |||||||| || |||||||||||||||||| |||||||||| |||||| ||||||||| || |
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|
| T |
24080175 |
tagacactcttaaaaaatgggtatactaactaaccgtcttttatatttt--atcatatatataaattattttttcaaatgactgagtctatataaaacta |
24080272 |
T |
|
| Q |
219 |
tttgcgtgaaacagtgg |
235 |
Q |
| |
|
|||| |||||||||||| |
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|
| T |
24080273 |
tttgggtgaaacagtgg |
24080289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 2602442 - 2602513
Alignment:
| Q |
70 |
accaataattttgctgaaatggtctacaaaaagcatggattcaaccctatagacacacttaaaaaatcggta |
141 |
Q |
| |
|
|||||| |||| ||||||| ||||||||||||||||||||| |||||||| | |||||||||||||||||| |
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|
| T |
2602442 |
accaatgatttcgctgaaaaggtctacaaaaagcatggattgaaccctatcaaaacacttaaaaaatcggta |
2602513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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