View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13773_high_24 (Length: 250)

Name: NF13773_high_24
Description: NF13773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13773_high_24
NF13773_high_24
[»] chr3 (9 HSPs)
chr3 (2-104)||(11150460-11150562)
chr3 (130-224)||(11150340-11150434)
chr3 (130-200)||(52043316-52043386)
chr3 (13-67)||(34825793-34825847)
chr3 (136-201)||(39605670-39605736)
chr3 (13-67)||(46652721-46652775)
chr3 (13-50)||(37085647-37085684)
chr3 (136-201)||(54672720-54672785)
chr3 (13-49)||(52092676-52092712)
[»] chr1 (12 HSPs)
chr1 (2-104)||(24303120-24303222)
chr1 (130-225)||(17241995-17242090)
chr1 (130-225)||(24302999-24303094)
chr1 (130-214)||(9010949-9011033)
chr1 (25-101)||(42098518-42098593)
chr1 (136-201)||(13970040-13970105)
chr1 (130-199)||(48030128-48030197)
chr1 (5-80)||(48030005-48030080)
chr1 (5-67)||(15233854-15233916)
chr1 (13-67)||(35712663-35712717)
chr1 (13-49)||(30232542-30232578)
chr1 (13-49)||(51676129-51676165)
[»] chr4 (6 HSPs)
chr4 (2-82)||(47862536-47862616)
chr4 (130-225)||(47862000-47862095)
chr4 (132-201)||(47378624-47378693)
chr4 (11-52)||(52963822-52963863)
chr4 (186-225)||(44355359-44355398)
chr4 (11-65)||(7708606-7708660)
[»] scaffold0262 (2 HSPs)
scaffold0262 (2-104)||(4145-4245)
scaffold0262 (130-224)||(4274-4368)
[»] chr8 (8 HSPs)
chr8 (2-105)||(40463369-40463470)
chr8 (130-224)||(40463496-40463590)
chr8 (132-225)||(9310816-9310909)
chr8 (5-80)||(44038788-44038863)
chr8 (13-67)||(26521793-26521847)
chr8 (136-201)||(38973842-38973908)
chr8 (136-201)||(39004940-39005006)
chr8 (137-225)||(40462337-40462426)
[»] chr7 (2 HSPs)
chr7 (130-225)||(5737244-5737339)
chr7 (13-49)||(23526551-23526587)
[»] chr6 (2 HSPs)
chr6 (12-104)||(7538436-7538527)
chr6 (5-55)||(17838951-17839001)
[»] chr2 (6 HSPs)
chr2 (5-100)||(31915839-31915934)
chr2 (31-101)||(18775303-18775373)
chr2 (5-67)||(18615749-18615811)
chr2 (13-55)||(18751243-18751285)
chr2 (5-67)||(29220697-29220759)
chr2 (5-67)||(29333996-29334058)
[»] chr5 (3 HSPs)
chr5 (13-101)||(7492824-7492911)
chr5 (31-101)||(6376824-6376893)
chr5 (13-50)||(27491061-27491098)
[»] scaffold0061 (1 HSPs)
scaffold0061 (60-101)||(9977-10017)


Alignment Details
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 11150562 - 11150460
Alignment:
Q  2 attaatttggatttttaatttaacattaagggtactttaggtatttcatatcttcaacattattttttgttaaaaaaattattatgtgtgccatgtggaa 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||| ||||||    
T  11150562 attaatttggatttttaatttaacattaagggtactttaggtatttcatatcttaaacattattttttgttaaaaaaattattataagtgccacgtggaa 11150463  T
Q  102 ttt 104  Q
    |||    
T  11150462 ttt 11150460  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 11150434 - 11150340
Alignment:
Q  130 taacacatcagcgtgccaaatcaccacattaatctaatcagatggcttgggggtgtaaaccaaagaatcttctaatagcaaggggggatctccaa 224  Q
    ||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  11150434 taacacatcagcgtgccaaatcatcacattaatccaatcagatgacttgggggtgtaaaccaaggaatcttctaatggcaaggggggatctccaa 11150340  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 52043316 - 52043386
Alignment:
Q  130 taacacatcagcgtgccaaatcaccacattaatctaatcagatggcttgggggtgtaaaccaaagaatctt 200  Q
    |||||||||| ||||||| |||| | |||| ||| | ||||||| ||||||||||||||||||| ||||||    
T  52043316 taacacatcatcgtgccacatcatctcattgatccagtcagatgacttgggggtgtaaaccaaataatctt 52043386  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 34825847 - 34825793
Alignment:
Q  13 tttttaatttaacattaagggtactttaggtatttcatatcttcaacattatttt 67  Q
    ||||||||||| ||||||||||| |||||||||||||| | || ||||| |||||    
T  34825847 tttttaatttatcattaagggtattttaggtatttcatctttttaacataatttt 34825793  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 39605736 - 39605670
Alignment:
Q  136 atcagcgtgccaaatcaccacattaatctaatcagatggcttggggg-tgtaaaccaaagaatcttc 201  Q
    |||||||||||| |||| | |||||||| | ||| |||| ||||||| |||||||||||||||||||    
T  39605736 atcagcgtgccacatcatcccattaatccagtcatatggtttggggggtgtaaaccaaagaatcttc 39605670  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 46652721 - 46652775
Alignment:
Q  13 tttttaatttaacattaagggtactttaggtatttcatatcttcaacattatttt 67  Q
    ||||||||||| ||||||||||| |||||||||||||| | || ||||| |||||    
T  46652721 tttttaatttatcattaagggtattttaggtatttcatctttttaacataatttt 46652775  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 37085684 - 37085647
Alignment:
Q  13 tttttaatttaacattaagggtactttaggtatttcat 50  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  37085684 tttttaatttatcattaagggtattttaggtatttcat 37085647  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 54672785 - 54672720
Alignment:
Q  136 atcagcgtgccaaatcaccacattaatctaatcagatggcttgggggtgtaaaccaaagaatcttc 201  Q
    |||||||||||| |||| | |||||||| | ||| |||| ||| ||||||||| ||||||||||||    
T  54672785 atcagcgtgccacatcatcccattaatccagtcatatggtttgagggtgtaaatcaaagaatcttc 54672720  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 52092676 - 52092712
Alignment:
Q  13 tttttaatttaacattaagggtactttaggtatttca 49  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  52092676 tttttaatttatcattaagggtattttaggtatttca 52092712  T

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Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 24303222 - 24303120
Alignment:
Q  2 attaatttggatttttaatttaacattaagggtactttaggtatttcatatcttcaacattattttttgttaaaaaaattattatgtgtgccatgtggaa 101  Q
    ||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  24303222 attaatttggaattttaatttaacagaaagggtactttaggtatttcatatcttcaacattattttttgttaaaaaaattaatatgtgtgccacgtggaa 24303123  T
Q  102 ttt 104  Q
    |||    
T  24303122 ttt 24303120  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 225
Target Start/End: Original strand, 17241995 - 17242090
Alignment:
Q  130 taacacatcagcgtgccaaatcaccacattaatctaatcagatggcttgggggtgtaaaccaaagaatcttctaatagcaaggggggatctccaag 225  Q
    |||||||||||||||||| |||| |||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||    
T  17241995 taacacatcagcgtgccacatcatcacattaatctagtcagatggtttgggggtgtaaaccaaagaatcttctaatggcaagggggaatctacaag 17242090  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 225
Target Start/End: Complemental strand, 24303094 - 24302999
Alignment:
Q  130 taacacatcagcgtgccaaatcaccacattaatctaatcagatggcttgggggtgtaaaccaaagaatcttctaatagcaaggggggatctccaag 225  Q
    ||||||||||||||||||||||| |||||||||| | |||||||||||| ||||||||| |||||||||||||||| ||||||||| |||||||||    
T  24303094 taacacatcagcgtgccaaatcatcacattaatccattcagatggcttgagggtgtaaatcaaagaatcttctaattgcaagggggaatctccaag 24302999  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 130 - 214
Target Start/End: Original strand, 9010949 - 9011033
Alignment:
Q  130 taacacatcagcgtgccaaatcaccacattaatctaatcagatggcttgggggtgtaaaccaaagaatcttctaatagcaagggg 214  Q
    |||||||||||||||||| |||| |||||||||| | |||||||| |||||||||||||||||||||||||||||| ||||||||    
T  9010949 taacacatcagcgtgccacatcatcacattaatccagtcagatggtttgggggtgtaaaccaaagaatcttctaatggcaagggg 9011033  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 42098518 - 42098593
Alignment:
Q  25 cattaagggtactttaggtatttcatatcttcaacattattttttgttaaaaaaattattatgtgtgccatgtggaa 101  Q
    ||||||||||| ||||||||||| | ||||| |  ||||||||||| || |||||||||||||||||||| ||||||    
T  42098518 cattaagggtaatttaggtattttacatctttagtattattttttg-tacaaaaattattatgtgtgccacgtggaa 42098593  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 13970105 - 13970040
Alignment:
Q  136 atcagcgtgccaaatcaccacattaatctaatcagatggcttgggggtgtaaaccaaagaatcttc 201  Q
    |||||||||||| |||| | |||||||| | ||| |||| |||||||| |||||||||||||||||    
T  13970105 atcagcgtgccacatcatctcattaatccagtcatatggtttgggggtataaaccaaagaatcttc 13970040  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 48030128 - 48030197
Alignment:
Q  130 taacacatcagcgtgccaaatcaccacattaatctaatcagatggcttgggggtgtaaaccaaagaatct 199  Q
    ||||||||||||| |||| || | |  ||| ||| ||||||||||| |||||||||||||||||||||||    
T  48030128 taacacatcagcgcgccacataagcttatttatccaatcagatggcctgggggtgtaaaccaaagaatct 48030197  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 48030005 - 48030080
Alignment:
Q  5 aatttggatttttaatttaacattaagggtactttaggtatttcatatcttcaacattattttttgttaaaaaaat 80  Q
    |||| |||||||||||||| ||| | ||||| ||||||||||||| ||||| |  |||||||||||  ||||||||    
T  48030005 aattgggatttttaatttagcatcaggggtattttaggtatttcacatctttagtattattttttgcaaaaaaaat 48030080  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 15233854 - 15233916
Alignment:
Q  5 aatttggatttttaatttaacattaagggtactttaggtatttcatatcttcaacattatttt 67  Q
    |||| ||||||||||||||  |||| ||||| ||||||||||||| ||||| | |||||||||    
T  15233854 aattaggatttttaatttagtattaggggtattttaggtatttcacatctttagcattatttt 15233916  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 35712717 - 35712663
Alignment:
Q  13 tttttaatttaacattaagggtactttaggtatttcatatcttcaacattatttt 67  Q
    ||||||||||| ||||||||||| |||||||||||||| | || ||||| |||||    
T  35712717 tttttaatttatcattaagggtattttaggtatttcatctttttaacataatttt 35712663  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 30232542 - 30232578
Alignment:
Q  13 tttttaatttaacattaagggtactttaggtatttca 49  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  30232542 tttttaatttatcattaagggtattttaggtatttca 30232578  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 51676129 - 51676165
Alignment:
Q  13 tttttaatttaacattaagggtactttaggtatttca 49  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  51676129 tttttaatttatcattaagggtattttaggtatttca 51676165  T

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Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 47862616 - 47862536
Alignment:
Q  2 attaatttggatttttaatttaacattaagggtactttaggtatttcatatcttcaacattattttttgttaaaaaaatta 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47862616 attaatttggatttttaatttaacattaagggtactttaggtatttcatatcttcaacattattttttgttaaaaaaatta 47862536  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 130 - 225
Target Start/End: Complemental strand, 47862095 - 47862000
Alignment:
Q  130 taacacatcagcgtgccaaatcaccacattaatctaatcagatggcttgggggtgtaaaccaaagaatcttctaatagcaaggggggatctccaag 225  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  47862095 taacacatcagcgtgccaaatcaccacattaatccaatcagatggtttggaggtgtaaaccaaagaatcttctaatggcaaggggggatctccaag 47862000  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 47378624 - 47378693
Alignment:
Q  132 acacatcagcgtgccaaatcaccacattaatctaatcagatggcttgggggtgtaaaccaaagaatcttc 201  Q
    |||||||||||||||| |||| | |||||||| | ||| || |||||||||| | |||||||||||||||    
T  47378624 acacatcagcgtgccacatcatctcattaatccagtcatatagcttgggggtatgaaccaaagaatcttc 47378693  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 52963863 - 52963822
Alignment:
Q  11 gatttttaatttaacattaagggtactttaggtatttcatat 52  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  52963863 gatttttaatttgacattaagggtattttaggtatttcatat 52963822  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 44355359 - 44355398
Alignment:
Q  186 aaaccaaagaatcttctaatagcaaggggggatctccaag 225  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  44355359 aaaccaaagaatcttctaatagcaagggggaatctacaag 44355398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 7708606 - 7708660
Alignment:
Q  11 gatttttaatttaacattaagggtactttaggtatttcatatcttcaacattatt 65  Q
    ||||||||||||  ||||| ||||| ||||||||||||| ||||||| |||||||    
T  7708606 gatttttaatttggcattaggggtattttaggtatttcacatcttcagcattatt 7708660  T

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Target: scaffold0262 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 4145 - 4245
Alignment:
Q  2 attaatttggatttttaatttaacattaagggtactttaggtatttcatatcttcaacattattttttgttaaaaaaattattatgtgtgccatgtggaa 101  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  4145 attaatttggatttt-aatttaacattaagggtactttaggtatttcatttcttcaacatta-tttttgttaaaaaaattattatgtgtgccacgtggaa 4242  T
Q  102 ttt 104  Q
    |||    
T  4243 ttt 4245  T

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Target: scaffold0262; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 4274 - 4368
Alignment:
Q  130 taacacatcagcgtgccaaatcaccacattaatctaatcagatggcttgggggtgtaaaccaaagaatcttctaatagcaaggggggatctccaa 224  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||| ||||||||    
T  4274 taacacatcagcgtgccaaatcatcatattaatccaatcagatggcttgggggtgtaaaccaaataatcttctaatggcaagagggaatctccaa 4368  T

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Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 40463369 - 40463470
Alignment:
Q  2 attaatttggatttttaatttaacattaagggtactttaggtatttcatatcttcaacattattttttgttaaaaaaattattatgtgtgccatgtggaa 101  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||| || |||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  40463369 attaatttggatttt-aatttaacattaagggtacttcaggtatttaatttcttcaacatta-tttttgttaaaaaaattattatgtgtgccacgtggaa 40463466  T
Q  102 tttt 105  Q
    ||||    
T  40463467 tttt 40463470  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 40463496 - 40463590
Alignment:
Q  130 taacacatcagcgtgccaaatcaccacattaatctaatcagatggcttgggggtgtaaaccaaagaatcttctaatagcaaggggggatctccaa 224  Q
    ||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |||||||||||||||| | ||||||| ||||||||    
T  40463496 taacacatcagcgtgccaaatcatcatattaatccaatcagatggcttgggggtgtaaatcaaagaatcttctaatggtaagggggaatctccaa 40463590  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 225
Target Start/End: Original strand, 9310816 - 9310909
Alignment:
Q  132 acacatcagcgtgccaaatcaccacattaatctaatcagatggcttgggggtgtaaaccaaagaatcttctaatagcaaggggggatctccaag 225  Q
    |||||||||||||||| |||| | |||||||| | ||| || |||||||||||| ||||| |||||||||| || ||||||||| |||||||||    
T  9310816 acacatcagcgtgccacatcatctcattaatccattcatatagcttgggggtgtgaaccagagaatcttctcatggcaagggggaatctccaag 9310909  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 44038788 - 44038863
Alignment:
Q  5 aatttggatttttaatttaacattaagggtactttaggtatttcatatcttcaacattattttttgttaaaaaaat 80  Q
    |||| |||||||||||||| ||||| ||||| ||||||||||||| || || |  |||||||||||| ||||||||    
T  44038788 aattgggatttttaatttagcattaggggtattttaggtatttcacatatttagtattattttttgtaaaaaaaat 44038863  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 26521793 - 26521847
Alignment:
Q  13 tttttaatttaacattaagggtactttaggtatttcatatcttcaacattatttt 67  Q
    ||||||||||| ||||||||||| |||||||||||||| | || ||||| |||||    
T  26521793 tttttaatttatcattaagggtattttaggtatttcatctttttaacataatttt 26521847  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 38973908 - 38973842
Alignment:
Q  136 atcagcgtgccaaatcaccacattaatctaatcagatggcttggggg-tgtaaaccaaagaatcttc 201  Q
    |||||||||||| |||| |  ||||||||| ||| |||| ||||||| |||||||||||||||||||    
T  38973908 atcagcgtgccacatcatcctattaatctagtcatatggtttggggggtgtaaaccaaagaatcttc 38973842  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 39005006 - 39004940
Alignment:
Q  136 atcagcgtgccaaatcaccacattaatctaatcagatggcttggggg-tgtaaaccaaagaatcttc 201  Q
    |||||||||||| |||| |  ||||||||| ||| |||| ||||||| |||||||||||||||||||    
T  39005006 atcagcgtgccacatcatcctattaatctagtcatatggtttggggggtgtaaaccaaagaatcttc 39004940  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 40462426 - 40462337
Alignment:
Q  137 tcagcgtgccaaatcaccacattaatctaatcagatggcttgggggt-gtaaaccaaagaatcttctaatagcaaggggggatctccaag 225  Q
    ||||||||||| |||| | |||||||| | |||||| || |  |||| | ||| |||||||||||||||| ||||||||| |||||||||    
T  40462426 tcagcgtgccacatcagctcattaatccagtcagattgcctcagggttgaaaatcaaagaatcttctaatggcaagggggaatctccaag 40462337  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 225
Target Start/End: Complemental strand, 5737339 - 5737244
Alignment:
Q  130 taacacatcagcgtgccaaatcaccacattaatctaatcagatggcttgggggtgtaaaccaaagaatcttctaatagcaaggggggatctccaag 225  Q
    |||||||||||||||||| |||| |||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||    
T  5737339 taacacatcagcgtgccacatcatcacattaatctagtcagatggtttgggggtgtaaaccaaagaatcttctaatggcaagggggaatctacaag 5737244  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 23526551 - 23526587
Alignment:
Q  13 tttttaatttaacattaagggtactttaggtatttca 49  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  23526551 tttttaatttatcattaagggtattttaggtatttca 23526587  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 7538527 - 7538436
Alignment:
Q  12 atttttaatttaacattaagggtactttaggtatttcatatcttcaacattattttttgttaaaaaaattattatgtgtgccatgtggaattt 104  Q
    ||||||||||| ||||||| |||| ||||||||||| ||||||| || ||||||||||| |||||||| |||||||||||||| ||| |||||    
T  7538527 atttttaatttgacattaatggtattttaggtattttatatcttaaatattattttttg-taaaaaaagtattatgtgtgccacgtgaaattt 7538436  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 17838951 - 17839001
Alignment:
Q  5 aatttggatttttaatttaacattaagggtactttaggtatttcatatctt 55  Q
    |||| ||||||||||||| |||||| ||||| |||||||||||||||||||    
T  17838951 aattgggatttttaatttgacattaggggtattttaggtatttcatatctt 17839001  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 31915839 - 31915934
Alignment:
Q  5 aatttggatttttaatttaacattaagggtactttaggtatttcatatcttcaacattattttttgttaaaaaaattattatgtg--tgccatgtgga 100  Q
    |||| |||||| ||||||| |||||  |||||||||||||||||| ||||| |||||||||||||||  |||||||||| |||||  |||||||||||    
T  31915839 aattgggatttgtaatttagcattataggtactttaggtatttcacatctttaacattattttttgt--aaaaaattataatgtgtatgccatgtgga 31915934  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 18775303 - 18775373
Alignment:
Q  31 gggtactttaggtatttcatatcttcaacattattttttgttaaaaaaattattatgtgtgccatgtggaa 101  Q
    ||||||||||||||||||| ||||| |  |||||||||||| |||||| |||||||| |||||| ||||||    
T  18775303 gggtactttaggtatttcacatctttagtattattttttgtaaaaaaatttattatgcgtgccacgtggaa 18775373  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 18615811 - 18615749
Alignment:
Q  5 aatttggatttttaatttaacattaagggtactttaggtatttcatatcttcaacattatttt 67  Q
    |||| |||||||||||||  ||||| ||||| ||||||||||||| ||||| || ||||||||    
T  18615811 aattgggatttttaatttggcattaggggtattttaggtatttcacatctttaatattatttt 18615749  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 18751243 - 18751285
Alignment:
Q  13 tttttaatttaacattaagggtactttaggtatttcatatctt 55  Q
    ||||||||||||||||| ||||| ||||||||||||| |||||    
T  18751243 tttttaatttaacattaggggtattttaggtatttcaaatctt 18751285  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 29220697 - 29220759
Alignment:
Q  5 aatttggatttttaatttaacattaagggtactttaggtatttcatatcttcaacattatttt 67  Q
    |||| |||||||||||||  ||||| ||||| ||||||||||||| ||||| || ||||||||    
T  29220697 aattgggatttttaatttggcattaggggtattttaggtatttcacatctttaatattatttt 29220759  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 29333996 - 29334058
Alignment:
Q  5 aatttggatttttaatttaacattaagggtactttaggtatttcatatcttcaacattatttt 67  Q
    |||| |||||||||||||  ||||| ||||| ||||||||||||| ||||| || ||||||||    
T  29333996 aattgggatttttaatttggcattaggggtattttaggtatttcacatctttaatattatttt 29334058  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 7492824 - 7492911
Alignment:
Q  13 tttttaatttaacattaagggtactttaggtatttcatatcttcaacattattttttgttaaaaaaattattatgtgtgccatgtggaa 101  Q
    ||||||||||| ||||| ||||||||||||||||||| ||||| |  ||||||| ||| ||||||||||||| ||||| ||| ||||||    
T  7492824 tttttaatttagcattaggggtactttaggtatttcacatctttagtattatttattg-taaaaaaattattttgtgtcccacgtggaa 7492911  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 6376824 - 6376893
Alignment:
Q  31 gggtactttaggtatttcatatcttcaacattattttttgttaaaaaaattattatgtgtgccatgtggaa 101  Q
    ||||||||||||||||||  ||||| |  |||||||||  | |||||||||||||||||||||||||||||    
T  6376824 gggtactttaggtatttcgaatctttagtattatttttc-taaaaaaaattattatgtgtgccatgtggaa 6376893  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 27491061 - 27491098
Alignment:
Q  13 tttttaatttaacattaagggtactttaggtatttcat 50  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  27491061 tttttaatttatcattaagggtattttaggtatttcat 27491098  T

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Target: scaffold0061 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 10017 - 9977
Alignment:
Q  60 attattttttgttaaaaaaattattatgtgtgccatgtggaa 101  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  10017 attattttttgt-aaaaaaattattatgtgtgccacgtggaa 9977  T

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