View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13773_high_7 (Length: 459)
Name: NF13773_high_7
Description: NF13773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13773_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 9370696 - 9370957
Alignment:
| Q |
18 |
gtacggtcctagtgtttattaacccccacacagtgcacacatgcaatttatttccttgttattatcatcaagtagtagcatcaacaaaaggagaatatct |
117 |
Q |
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| T |
9370696 |
gtacagtcctagtgtttattaacccccacacagtgtacacatgcaatttatttccttgttattatcatcaagtagtagcatcaacaaaaggagaatatct |
9370795 |
T |
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| Q |
118 |
ttataaccgttttaagccatttgactttggagttgacagatttggctaactttaattgattttggaccttgttggtagatggttccacttattatacagt |
217 |
Q |
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| T |
9370796 |
ttataaccgttttaagccatttgactttggagttgacagatttggctaactttaattgattttggaccttgttggtagatggttccacttattatagagt |
9370895 |
T |
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| Q |
218 |
atggcaagcaactagatgtggatcacattcatagatagtgaaatgacgagtaatcaatttag |
279 |
Q |
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| T |
9370896 |
atggcaagcaactagatgtggatcacattcatagatagtgaaatgaccagcaatcaatttag |
9370957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 271 - 444
Target Start/End: Original strand, 9371891 - 9372065
Alignment:
| Q |
271 |
tcaatttagatgtaaactcatcctagcctctaag-atgtccatgcgtcaaaataaggagaagcggatcgagggagtcaaagcaataataggattcacatt |
369 |
Q |
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| T |
9371891 |
tcaatttagatgtaaactcatcctagcctctaaggatgtccatgcgtcaaaataaggagaatcggatcgagggagtcaaaacaataataggattcacatt |
9371990 |
T |
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| Q |
370 |
gagaagaatgttgttcgcacaaagtgtttggctgaaaagcacaaataatttatcaatataaccccatcgattctt |
444 |
Q |
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| T |
9371991 |
gagaagaattttgttcacacaaagtgtttggctgaaaagcacaaataatttaccaatataaccccatcgactctt |
9372065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 14922838 - 14922772
Alignment:
| Q |
372 |
gaagaatgttgttcgcacaaagtgtttggctgaaaagcacaaataatttatcaatataaccccatcg |
438 |
Q |
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| T |
14922838 |
gaagaatgttgttcacatatagtatttggctgaaaaacaacaataattttccaatataaccccatcg |
14922772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 432
Target Start/End: Complemental strand, 44327614 - 44327553
Alignment:
| Q |
371 |
agaagaatgttgttcgcacaaagtgtttggctgaaaagcacaaataatttatcaatataacc |
432 |
Q |
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| T |
44327614 |
agaagaatgttgttcacacataatgtttggttgaaaaacacaagtaatttatcaatataacc |
44327553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 439
Target Start/End: Original strand, 7409375 - 7409440
Alignment:
| Q |
374 |
agaatgttgttcgcacaaagtgtttggctgaaaagcacaaataatttatcaatataaccccatcga |
439 |
Q |
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| T |
7409375 |
agaatgttgttcacacgtagtgtttggctgaaaaacatcaccaatttatcaatataactccatcga |
7409440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 431
Target Start/End: Complemental strand, 41733064 - 41733005
Alignment:
| Q |
372 |
gaagaatgttgttcgcacaaagtgtttggctgaaaagcacaaataatttatcaatataac |
431 |
Q |
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| T |
41733064 |
gaagaatgttattcacacatagtgtttggctgaaaaacatcaataatttatcaatataac |
41733005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 436
Target Start/End: Original strand, 55583706 - 55583771
Alignment:
| Q |
371 |
agaagaatgttgttcgcacaaagtgtttggctgaaaagcacaaataatttatcaatataaccccat |
436 |
Q |
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| T |
55583706 |
agaagaatgttgttcacacataatgtttggctgaaaaacatcagtaatttaccaatataaccccat |
55583771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 432
Target Start/End: Original strand, 45073184 - 45073244
Alignment:
| Q |
372 |
gaagaatgttgttcgcacaaagtgtttggctgaaaagcacaaataatttatcaatataacc |
432 |
Q |
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| T |
45073184 |
gaagaatgttgttcacacatggtgtttggctggaaaacaccagtaatttaccaatataacc |
45073244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 429
Target Start/End: Complemental strand, 33930028 - 33929971
Alignment:
| Q |
372 |
gaagaatgttgttcgcacaaagtgtttggctgaaaagcacaaataatttatcaatata |
429 |
Q |
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| T |
33930028 |
gaagaatgttgttcacacataatgtttggctggaaaacaccagtaatttatcaatata |
33929971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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