View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13773_high_9 (Length: 425)
Name: NF13773_high_9
Description: NF13773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13773_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 2137951 - 2137732
Alignment:
| Q |
11 |
cacagaactagaagctggattgaatcgcatcactgaaacagtggcaaaaaaccacttagaagtcctagctgagatagatcgacttacgaaggcctttgag |
110 |
Q |
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| T |
2137951 |
cacagaactagaagctggattgaatcgcatcactgaaacagtggcaaaaaaccacttagaagtcctagccgagatagatcgacttacgaaggcctttgag |
2137852 |
T |
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| Q |
111 |
acacttcagcaagggaacacgccgtttcaagagtcatccgatgctactgtgatcaactcaaccaaacagtcggtgagatatgttaaactttatgatttct |
210 |
Q |
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| T |
2137851 |
acacttcagcaagggaacacgccgtttcaagagtcatcccatgctactgtgatcaactcaaccaaacagtcggtgagatatgttaaacttgatgatttct |
2137752 |
T |
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| Q |
211 |
aaaatgttatgaatttgatt |
230 |
Q |
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||||| |||||||||||||| |
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| T |
2137751 |
aaaattttatgaatttgatt |
2137732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 233 - 407
Target Start/End: Complemental strand, 2137701 - 2137527
Alignment:
| Q |
233 |
attgaatttataagacatattacagttcaaaatataagagatgtttcaaataggaaagaaaatacacagtatcacacacaatgcccccaaaaaactgcat |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2137701 |
attgaatttataagacatattacagttcaaaatataagagatgtttcaaaaaggaaagaaaatacacagtatcacacacaatgcccccaaaaaactgcat |
2137602 |
T |
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| Q |
333 |
tgtccattctttgttatcaaatttctggaaaactatgacggccaaattggttatgttcaatttgatgtaatagat |
407 |
Q |
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| T |
2137601 |
tgtccattctttgttatcaaatttctggaaaactatgacgaccaaattggttatgttcaatttgatgtaatagat |
2137527 |
T |
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