View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13773_low_10 (Length: 409)
Name: NF13773_low_10
Description: NF13773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13773_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 38051431 - 38051222
Alignment:
| Q |
1 |
aaatattgagtttgttttaagactttaagccactgtgtggtggcgtcctggtcataacgcagcgaaaacacaaagcaattccaaatcaggttcgttgaac |
100 |
Q |
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| T |
38051431 |
aaatattgagtttgttttaagactttaagccactgtgtggtggcgtcctggtcataacgcagcgaaaacacaaagcaattccaaatcaggttcgttgaac |
38051332 |
T |
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| Q |
101 |
ttttacaccttatacttcatattcatattcatattcatacccccttttcttcctctttttcttcacttaacacgtatttgtctccatctttgaaaaacta |
200 |
Q |
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| T |
38051331 |
ttttacaccttatacttcatattcatatt------catacccccttttcttcctctttttcttcacttaacacgtatttgtctccatctttgaaaaacta |
38051238 |
T |
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| Q |
201 |
caaagttcatcgaatc |
216 |
Q |
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|||||||||||||||| |
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| T |
38051237 |
caaagttcatcgaatc |
38051222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 259 - 394
Target Start/End: Complemental strand, 38051165 - 38051030
Alignment:
| Q |
259 |
ccaagacatgggaagtgtgactatgaatccattatttaggactgaatcttttggatattacaactttcctgatcagaactacaccatgatagagaagaga |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38051165 |
ccaagacatgggaagtgtgactatgaatccattatttaggactgaatcttttggatattacaactttcctgatcagaactacaccatgatagagaagaga |
38051066 |
T |
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| Q |
359 |
cagttattcctaagaagctaccagttctgtagaaag |
394 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
38051065 |
cagttattcctaagaagctaccagttctgtagaaag |
38051030 |
T |
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