View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13773_low_13 (Length: 313)
Name: NF13773_low_13
Description: NF13773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13773_low_13 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 6967309 - 6966998
Alignment:
| Q |
1 |
ctgcaagtattatttaattatagcacttgattgatgttataatgannnnnnngtgttactagtggtgggggacnnnnnnnncctgaattggggcaaggga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||| |
|
|
| T |
6967309 |
ctgcaagtattatttaattatagcacttgattgatgttataatgatttttt-gtgttactagtagtgggggacttttttttcctaaattggggcaaggga |
6967211 |
T |
|
| Q |
101 |
aattatttgttaaatgatcattttacaaagattccacgtaggatttaaacttcgtactttaaagttacaaattcaaactcgtatcactgtgttgacacat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6967210 |
aattatttgttaaatgatcattttacaaagattccacgtagaatttaaacttcgtactttaaagttacaaattcaaactcgtatcactgtgttgacacat |
6967111 |
T |
|
| Q |
201 |
cgtggactaacgagctacatacttgtattggagtgttttctttatcagacctcttgcattgaaagataagttattatattgtatttttggtgaagagcta |
300 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6967110 |
cgtagactaatgagctacatacttgtattggagtgttttctttatcaaacctcttgcattgaaagataagttattatattgtatttttggtgaagagcta |
6967011 |
T |
|
| Q |
301 |
ttacattgtttat |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6967010 |
ttacattgtttat |
6966998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University