View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13773_low_14 (Length: 308)
Name: NF13773_low_14
Description: NF13773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13773_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 54172696 - 54172497
Alignment:
| Q |
19 |
gattattctcctccaattacaagattagaaggcgatgattacaacaaagacaatgataatgatgatgacaaattaggagatttcaataatcttaaaccaa |
118 |
Q |
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| T |
54172696 |
gattattctcctccaattacaagattagaaggcgatgattacaacaaagacaatgataatgatgatgacaaattaggagatttcaataatcttaaaccaa |
54172597 |
T |
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| Q |
119 |
ccacaattggtaaacctccaaggcatgcttccagtttgagacatagccttagctccaatagattgaaactggctgcatcagatttggtatgttattcaac |
218 |
Q |
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| T |
54172596 |
ccacaattggtaaacctccaaggcatgcttccagtttgagacatagccttagctccaatagattgaaactggctgcatcagatttggtatgttattcaac |
54172497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 54172456 - 54172420
Alignment:
| Q |
258 |
atagtaattatatattttgacattttggttcatgtca |
294 |
Q |
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| T |
54172456 |
atagtaattatatattttgacattttggttcatgtca |
54172420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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