View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13773_low_15 (Length: 296)

Name: NF13773_low_15
Description: NF13773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13773_low_15
NF13773_low_15
[»] chr2 (11 HSPs)
chr2 (1-296)||(23783613-23783920)
chr2 (1-247)||(23768151-23768397)
chr2 (1-215)||(8379522-8379736)
chr2 (8-213)||(30394884-30395089)
chr2 (60-210)||(30437197-30437347)
chr2 (2-210)||(30384444-30384652)
chr2 (50-210)||(30424899-30425059)
chr2 (50-210)||(30475960-30476120)
chr2 (50-210)||(30430932-30431092)
chr2 (50-210)||(30468998-30469158)
chr2 (50-209)||(30483921-30484080)
[»] chr5 (1 HSPs)
chr5 (50-209)||(41627756-41627915)
[»] chr8 (4 HSPs)
chr8 (52-143)||(15852326-15852417)
chr8 (50-143)||(15845119-15845212)
chr8 (50-143)||(15859313-15859406)
chr8 (50-143)||(15866019-15866112)


Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 23783920 - 23783613
Alignment:
Q  1 atgggattgagtcttgaagaagtagtcggggaatgcaggttattccatgttgcagggcaagagactacttcagatttgcttgtttggacgatggtgttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23783920 atgggattgagtcttgaagaagtagtcggggaatgcaggttattccatgttgcagggcaagagactacttcagatttgcttgtttggacgatggtgttgt 23783821  T
Q  101 tgagtaggtaccctgattggcaagaacgtgcgaggaaggaagtattagagatatttggcaatgaaaaacccgactttgatggactaaataaacttaagat 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23783820 tgagtaggtaccctgattggcaagaacgtgcaaggaaggaagtattagagatatttggcaatgaaaaacccgactttgatggactaaataaacttaagat 23783721  T
Q  201 tgtaagtattttaatttcatcttcttctaattgcagcttagttatgt------------aatagtcttaatacttttggtaacataaatttgttttgttt 288  Q
    |||||||||||||||||||| || || ||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||    
T  23783720 tgtaagtattttaatttcatatttttgtaattgcagcttagttatgtaacataaattccaatagtcttaatacttttggtaacataaatttgttttgttt 23783621  T
Q  289 tagatggc 296  Q
    ||||||||    
T  23783620 tagatggc 23783613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 23768151 - 23768397
Alignment:
Q  1 atgggattgagtcttgaagaagtagtcggggaatgcaggttattccatgttgcagggcaagagactacttcagatttgcttgtttggacgatggtgttgt 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23768151 atgggattgagtcttgaagaagtagtcggggaatgcatgttattccatattgcagggcaagagactacttcagatttgcttgtttggacgatggtgttgt 23768250  T
Q  101 tgagtaggtaccctgattggcaagaacgtgcgaggaaggaagtattagagatatttggcaatgaaaaacccgactttgatggactaaataaacttaagat 200  Q
    |||||||| |||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23768251 tgagtaggcacccagattggcaagaacgtgcccggaaggaagtattagagatatttggcaatgaaaaaccagactttgatggactaaataaacttaagat 23768350  T
Q  201 tgtaagtattttaatttcatcttcttctaattgcagcttagttatgt 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  23768351 tgtaagtattttaatttcatcttcttctaattgcagcttagttatgt 23768397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 8379736 - 8379522
Alignment:
Q  1 atgggattgagtcttgaagaagtagtcggggaatgcaggttattccatgttgcagggcaagagactacttcagatttgcttgtttggacgatggtgttgt 100  Q
    |||||| ||||||||||||| ||||| |||||||||| ||||||| |  | |||||||||||  ||||||||  | ||||||||||||| ||| | ||||    
T  8379736 atgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttcaactatgcttgtttggacaatgatattgt 8379637  T
Q  101 tgagtaggtaccctgattggcaagaacgtgcgaggaaggaagtattagagatatttggcaatgaaaaacccgactttgatggactaaataaacttaagat 200  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| | |||||||||||  ||||||| |||| ||| ||||||||||||||||||||    
T  8379636 tgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaaaaaaccagactatgaaggactaaataaacttaagat 8379537  T
Q  201 tgtaagtattttaat 215  Q
    |||||||||||||||    
T  8379536 tgtaagtattttaat 8379522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 30394884 - 30395089
Alignment:
Q  8 tgagtcttgaagaagtagtcggggaatgcaggttattccatgttgcagggcaagagactacttcagatttgcttgtttggacgatggtgttgttgagtag 107  Q
    ||||||||||  | ||||||| |||||||| ||| |||||| ||||||||||||| |||||||| | ||||||||||||||| ||| | |||||||||||    
T  30394884 tgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttggacaatgatattgttgagtag 30394983  T
Q  108 gtaccctgattggcaagaacgtgcgaggaaggaagtattagagatatttggcaatgaaaaacccgactttgatggactaaataaacttaagattgtaagt 207  Q
    ||||||||||||||||  |||||| ||| ||||||| ||| |  | ||||||||  ||||||| || |||||||| |||||||| || ||||||||||||    
T  30394984 gtaccctgattggcaaacacgtgctagggaggaagtgttacatgtctttggcaacaaaaaaccagattttgatgggctaaataacctaaagattgtaagt 30395083  T
Q  208 atttta 213  Q
    | ||||    
T  30395084 aattta 30395089  T

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Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 60 - 210
Target Start/End: Original strand, 30437197 - 30437347
Alignment:
Q  60 agagactacttcagatttgcttgtttggacgatggtgttgttgagtaggtaccctgattggcaagaacgtgcgaggaaggaagtattagagatatttggc 159  Q
    |||||| ||||| | ||||||||||||||| || ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||| |  ||||||||    
T  30437197 agagacaacttctgttttgcttgtttggacaatagtgttgttgagtaggtaccctgattggcaagcacgtgcaagggaggaagtattacaagtatttggc 30437296  T
Q  160 aatgaaaaacccgactttgatggactaaataaacttaagattgtaagtatt 210  Q
    ||  | |||||||| |||||||| |||| | | ||||||||||||||||||    
T  30437297 aacaataaacccgattttgatgggctaagtcatcttaagattgtaagtatt 30437347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 30384444 - 30384652
Alignment:
Q  2 tgggattgagtcttgaagaagtagtcggggaatgcaggttattccatgttgcagggcaagagactacttcagatttgcttgtttggacgatggtgttgtt 101  Q
    ||||| |||||||||| || ||||||| |||||||| ||| |||||  ||||||| |||||||||||||| | ||||||||||||||| ||| | || ||    
T  30384444 tgggaatgagtcttgatgatgtagtcgaggaatgcaagttgttccactttgcaggtcaagagactacttcggttttgcttgtttggacaatgatattatt 30384543  T
Q  102 gagtaggtaccctgattggcaagaacgtgcgaggaaggaagtattagagatatttggcaatgaaaaacccgactttgatggactaaataaacttaagatt 201  Q
    ||||||||||||||||||||||   ||||| ||| ||||||| ||| |  | ||||||||   |||||| || |||||||| |||||||| || |||||     
T  30384544 gagtaggtaccctgattggcaaacccgtgcaagggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatc 30384643  T
Q  202 gtaagtatt 210  Q
    |||||||||    
T  30384644 gtaagtatt 30384652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 30424899 - 30425059
Alignment:
Q  50 ttgcagggcaagagactacttcagatttgcttgtttggacgatggtgttgttgagtaggtaccctgattggcaagaacgtgcgaggaaggaagtattaga 149  Q
    ||||||| |||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |    
T  30424899 ttgcaggccaagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtattaca 30424998  T
Q  150 gatatttggcaatgaaaaacccgactttgatggactaaataaacttaagattgtaagtatt 210  Q
      | ||||||||  | ||||| |||||||| || |||| | | |||||||| |||||||||    
T  30424999 agtttttggcaacaataaacctgactttgacgggctaagtcatcttaagatcgtaagtatt 30425059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 30475960 - 30476120
Alignment:
Q  50 ttgcagggcaagagactacttcagatttgcttgtttggacgatggtgttgttgagtaggtaccctgattggcaagaacgtgcgaggaaggaagtattaga 149  Q
    |||||||||||||||| ||||| | ||||||||||||| | ||| |||||||||||||||| |||||||||||||  ||||| ||| ||||||||||  |    
T  30475960 ttgcagggcaagagaccacttctgttttgcttgtttgggcaatgatgttgttgagtaggtatcctgattggcaagctcgtgcaagggaggaagtattgca 30476059  T
Q  150 gatatttggcaatgaaaaacccgactttgatggactaaataaacttaagattgtaagtatt 210  Q
      | || |||||| ||||||| || ||||||||||||||  ||||||||||||||||||||    
T  30476060 agtcttcggcaataaaaaaccagattttgatggactaaaccaacttaagattgtaagtatt 30476120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 30430932 - 30431092
Alignment:
Q  50 ttgcagggcaagagactacttcagatttgcttgtttggacgatggtgttgttgagtaggtaccctgattggcaagaacgtgcgaggaaggaagtattaga 149  Q
    ||||||| |||||||| ||||| | ||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| ||| | ||||||||| |    
T  30430932 ttgcaggacaagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaaccagattggcaagaacgtgcaagggaagaagtattaca 30431031  T
Q  150 gatatttggcaatgaaaaacccgactttgatggactaaataaacttaagattgtaagtatt 210  Q
      ||||||||||  | ||||| || ||||| || |||| | | |||||||| |||||||||    
T  30431032 agtatttggcaacaataaaccagaatttgacgggctaagtcatcttaagatcgtaagtatt 30431092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 30468998 - 30469158
Alignment:
Q  50 ttgcagggcaagagactacttcagatttgcttgtttggacgatggtgttgttgagtaggtaccctgattggcaagaacgtgcgaggaaggaagtattaga 149  Q
    ||||||| |||||||| ||||| | ||||||||||||||| |||||||| |||||||||||||| ||||||||||  ||||| ||| | ||||||||| |    
T  30468998 ttgcaggccaagagaccacttctgttttgcttgtttggacaatggtgttattgagtaggtaccccgattggcaagcgcgtgcaagggaagaagtattaca 30469097  T
Q  150 gatatttggcaatgaaaaacccgactttgatggactaaataaacttaagattgtaagtatt 210  Q
    | | ||||||||  | ||||| || ||||| || |||| | | ||||||||||||||||||    
T  30469098 ggtctttggcaacaataaacctgattttgacgggctaagtcatcttaagattgtaagtatt 30469158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 30483921 - 30484080
Alignment:
Q  50 ttgcagggcaagagactacttcagatttgcttgtttggacgatggtgttgttgagtaggtaccctgattggcaagaacgtgcgaggaaggaagtattaga 149  Q
    |||||||| |||| || ||||||| ||||||||||||||| || || || ||||||||| ||||| ||||||||| |||||| ||  |||||||  || |    
T  30483921 ttgcaggggaagaaaccacttcagttttgcttgtttggacaattgtattattgagtaggcaccctaattggcaagcacgtgcaagagaggaagtgctaca 30484020  T
Q  150 gatatttggcaatgaaaaacccgactttgatggactaaataaacttaagattgtaagtat 209  Q
      | ||||||||  || |||| || ||||| ||||||||  | |||||||||||||||||    
T  30484021 agtttttggcaacaaacaaccagattttgaaggactaaaccatcttaagattgtaagtat 30484080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 50 - 209
Target Start/End: Complemental strand, 41627915 - 41627756
Alignment:
Q  50 ttgcagggcaagagactacttcagatttgcttgtttggacgatggtgttgttgagtaggtaccctgattggcaagaacgtgcgaggaaggaagtattaga 149  Q
    |||||||||||||||||||||||  ||| ||||||||||| ||||| || ||||||||||||||||| ||||||| | | || ||| ||||||||||| |    
T  41627915 ttgcagggcaagagactacttcaactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaagcaagggcaagggaggaagtattaca 41627816  T
Q  150 gatatttggcaatgaaaaacccgactttgatggactaaataaacttaagattgtaagtat 209  Q
     || ||||||||  |||||||  | |||||||| ||||||||  | ||||||||||||||    
T  41627815 aatctttggcaacaaaaaacctaattttgatgggctaaataacttgaagattgtaagtat 41627756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 15852417 - 15852326
Alignment:
Q  52 gcagggcaagagactacttcagatttgcttgtttggacgatggtgttgttgagtaggtaccctgattggcaagaacgtgcgaggaaggaagt 143  Q
    |||||||||||||| ||||||  |||||| |||||||| |||||||| ||  | ||||| ||||| |||||||||||||| ||| |||||||    
T  15852417 gcagggcaagagaccacttcaagtttgctggtttggacaatggtgttattaggcaggtatcctgaatggcaagaacgtgcaaggcaggaagt 15852326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 15845212 - 15845119
Alignment:
Q  50 ttgcagggcaagagactacttcagatttgcttgtttggacgatggtgttgttgagtaggtaccctgattggcaagaacgtgcgaggaaggaagt 143  Q
    |||| ||||||||||| ||||||  |||||| |||||||| |||||||| ||  | ||||| ||||| |||||||||||||| ||| |||||||    
T  15845212 ttgctgggcaagagaccacttcaagtttgctggtttggacaatggtgttattaggcaggtatcctgaatggcaagaacgtgcaaggcaggaagt 15845119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 15859406 - 15859313
Alignment:
Q  50 ttgcagggcaagagactacttcagatttgcttgtttggacgatggtgttgttgagtaggtaccctgattggcaagaacgtgcgaggaaggaagt 143  Q
    |||| ||||||||||| |||| |  |||||| |||||||| |||||||| ||  | ||||| ||||| ||||||| |||||| ||| |||||||    
T  15859406 ttgctgggcaagagacgacttaaagtttgctggtttggacaatggtgttattaggcaggtatcctgaatggcaagcacgtgcaagggaggaagt 15859313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 15866112 - 15866019
Alignment:
Q  50 ttgcagggcaagagactacttcagatttgcttgtttggacgatggtgttgttgagtaggtaccctgattggcaagaacgtgcgaggaaggaagt 143  Q
    |||| ||||||||||| || |||  |||||| |||||||| |||||||| ||  | ||||| ||||| ||||||| |||||| ||| |||||||    
T  15866112 ttgctgggcaagagaccacctcaagtttgctggtttggacaatggtgttattaggcaggtatcctgaatggcaagcacgtgcaaggcaggaagt 15866019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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