View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13773_low_20 (Length: 262)
Name: NF13773_low_20
Description: NF13773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13773_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 38180816 - 38180566
Alignment:
| Q |
1 |
atatacatgcataaccgttgcatatcacacttcctttactctactggttcgtgctattgcattttcacaagccaccactaccatggcgcaaaaccaccac |
100 |
Q |
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| T |
38180816 |
atatacattcataaccgttgcatatcacacttcctttactctactggttcgtgctattgcattttcacaagccaccactaccatggcgcaaaaccaccac |
38180717 |
T |
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| Q |
101 |
ttcctcatcatcacatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctacca |
200 |
Q |
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| T |
38180716 |
ttcctcatcatcacatacccactacacggtcacataaaccctgctctccaattcgccaaacgtctcatttctttgggcgcacaagtcacttttgctacca |
38180617 |
T |
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| Q |
201 |
ctatctacttacacactcgccttaccaacaaatcaaccatcccgggccttt |
251 |
Q |
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| T |
38180616 |
ctatctacttacacactcgccttaccaacaaatcaaccatctcgggccttt |
38180566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 51 - 249
Target Start/End: Complemental strand, 38185435 - 38185237
Alignment:
| Q |
51 |
gtgctattgcattttcacaagccaccactaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctcca |
150 |
Q |
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| T |
38185435 |
gtgctattgcattttcacaagccaccattaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgcactcca |
38185336 |
T |
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| Q |
151 |
attcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgccttaccaacaaatcaaccatcccgggcct |
249 |
Q |
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| T |
38185335 |
attcgccaagcgtctcatttctttcggcgcacaagtcacttttgctacaactatctacttacacactggccttatcaacaaaccaaccatcccaggcct |
38185237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 56 - 249
Target Start/End: Complemental strand, 38170947 - 38170754
Alignment:
| Q |
56 |
attgcattttcacaagccaccactaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctccaattcg |
155 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
38170947 |
attgcattttcacaatccaccactaccatggcgcaaaaccaccacttcctcatcataacatacccactacaaggtcacataaaccctgccctccaattca |
38170848 |
T |
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| Q |
156 |
ccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgccttaccaacaaatcaaccatcccgggcct |
249 |
Q |
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| T |
38170847 |
ccaagcgtctcatttctttgggcgcaaaagtcacttttgctaccactatccacttatacagtcgccttatcaacaaaccaaccatcccgggcct |
38170754 |
T |
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