View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13773_low_21 (Length: 255)

Name: NF13773_low_21
Description: NF13773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13773_low_21
NF13773_low_21
[»] chr6 (9 HSPs)
chr6 (64-237)||(13931000-13931173)
chr6 (18-62)||(13930912-13930956)
chr6 (94-168)||(14021262-14021336)
chr6 (94-171)||(14045993-14046070)
chr6 (94-171)||(14109055-14109132)
chr6 (83-171)||(13894381-13894469)
chr6 (94-171)||(13863795-13863872)
chr6 (22-55)||(13894539-13894572)
chr6 (18-62)||(14023945-14023989)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 64 - 237
Target Start/End: Original strand, 13931000 - 13931173
Alignment:
Q  64 gcacgtccagacggtatattcaagaaaaatagtgttttgagacatgctgggagcgaggagaaatcatctccgaagagttacgatgcaaataattcagaaa 163  Q
    |||||||||||  ||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| |||||||||| ||| |||    
T  13931000 gcacgtccagattgtatattaaagaaaaatagtgttttgagacatgttgggagcaaggagaaatcatctccgaatagttacaatgcaaataaatcataaa 13931099  T
Q  164 ccattcatctacctagagtaggacttttgctgcacagaccttaatctgatccaccaccaactaactttcgagta 237  Q
    ||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||    
T  13931100 ccattcatctttctagagtaggacttttactgcacagaccttaatctgatccaccaccaacgaactatcgagta 13931173  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 13930912 - 13930956
Alignment:
Q  18 gattgtttctcctctcccctcaacatctctcaaaacactaaattt 62  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  13930912 gattgtttctcctctcccctcaacgtctctcaaaacactaaattt 13930956  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 14021262 - 14021336
Alignment:
Q  94 agtgttttgagacatgctgggagcgaggagaaatcatctccgaagagttacgatgcaaataattcagaaaccatt 168  Q
    |||||||||||||||| | |||||||||||||||||| | |  ||| |||| |||||||||||||| ||||||||    
T  14021262 agtgttttgagacatgttaggagcgaggagaaatcatgttcctagatttacaatgcaaataattcacaaaccatt 14021336  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 171
Target Start/End: Original strand, 14045993 - 14046070
Alignment:
Q  94 agtgttttgagacatgctgggagcgaggagaaatcatctccgaagagttacgatgcaaataattcagaaaccattcat 171  Q
    |||||||||| ||||| |||||||||||||||||||| | |  ||| |||| ||||||| |||||| |||||||||||    
T  14045993 agtgttttgaaacatgttgggagcgaggagaaatcatgttcctagatttacaatgcaaacaattcacaaaccattcat 14046070  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 171
Target Start/End: Original strand, 14109055 - 14109132
Alignment:
Q  94 agtgttttgagacatgctgggagcgaggagaaatcatctccgaagagttacgatgcaaataattcagaaaccattcat 171  Q
    |||||||||||||||| ||||||| ||||||||||||||    |||||||| | |||||||||||| ||| |||||||    
T  14109055 agtgttttgagacatgttgggagcaaggagaaatcatctttctagagttacaaagcaaataattcacaaatcattcat 14109132  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 13894469 - 13894381
Alignment:
Q  83 tcaagaaaaatagtgttttgagacatgctgggagcgaggagaaatcatctccgaagagttacgatgcaaataattcagaaaccattcat 171  Q
    ||||||||||||||||||| ||||||| |||   ||| ||||| ||||||    |||||||| |||||||||||||| ||| |||||||    
T  13894469 tcaagaaaaatagtgttttaagacatgttggagacgatgagaagtcatcttactagagttacaatgcaaataattcataaaacattcat 13894381  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 13863872 - 13863795
Alignment:
Q  94 agtgttttgagacatgctgggagcgaggagaaatcatctccgaagagttacgatgcaaataattcagaaaccattcat 171  Q
    ||||||||||||||||  | | | |||||||||||||||    |||||||| |||||||||||||| ||| |||||||    
T  13863872 agtgttttgagacatgtcgagtgagaggagaaatcatcttactagagttacaatgcaaataattcacaaaacattcat 13863795  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 13894572 - 13894539
Alignment:
Q  22 gtttctcctctcccctcaacatctctcaaaacac 55  Q
    |||||||||| |||||||||||||||||||||||    
T  13894572 gtttctcctcgcccctcaacatctctcaaaacac 13894539  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 14023945 - 14023989
Alignment:
Q  18 gattgtttctcctctcccctcaacatctctcaaaacactaaattt 62  Q
    ||||| ||||||||  ||||||||||||||||||||||| |||||    
T  14023945 gattgcttctcctcggccctcaacatctctcaaaacactcaattt 14023989  T

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