View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13773_low_28 (Length: 227)
Name: NF13773_low_28
Description: NF13773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13773_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27977355 - 27977134
Alignment:
| Q |
1 |
tcttctcaacctcatttttcattcctttcacaagactaagaccagcttgtaactcacttgcaactttactattctcttgtttcatgttaagaatctcacg |
100 |
Q |
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| T |
27977355 |
tcttctcaacatcatttttcattcctttcacaagactaagaccagcttgtaactcacttgcaactttactattctcttgtttcatgttaagaatctcacc |
27977256 |
T |
|
| Q |
101 |
ttgaaattttgcaacttgataaccacttattatctcagcatctttatctttattattttcatcagcaccaccagattctgcattattattattacctgct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27977255 |
ttgaaattttgcaacttgataaccacttattatctcagcatctttatctttattattttcatcagcaccaccagattcttcattattattattacctgct |
27977156 |
T |
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| Q |
201 |
cttgcaatttcatcttgaatgt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
27977155 |
cttgcaatttcatcttgaatgt |
27977134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 28307038 - 28306967
Alignment:
| Q |
14 |
atttttcattcctttcacaagactaagaccagcttgtaactcacttgcaactttactattctcttgtttcatgtt |
88 |
Q |
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|||||||||||||||||||||| |||||| | |||||| ||||||||||| ||||||||||| |||||||||| |
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| T |
28307038 |
atttttcattcctttcacaagaataagactaatttgtaattcacttgcaac-ttactattctc--gtttcatgtt |
28306967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 28306944 - 28306867
Alignment:
| Q |
148 |
ctttattattttcatcagcaccaccagattctgc---attattattattacctgctcttgcaatttcatcttgaatgt |
222 |
Q |
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||||||||||||||||| || ||||||||| | |||||||| ||||||| ||||||||||||| |||||||||| |
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| T |
28306944 |
ctttattattttcatcaacattaccagattccacttaattattatgattacctactcttgcaatttcttcttgaatgt |
28306867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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