View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13773_low_3 (Length: 568)

Name: NF13773_low_3
Description: NF13773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13773_low_3
NF13773_low_3
[»] chr7 (1 HSPs)
chr7 (1-463)||(5847382-5847845)
[»] chr6 (2 HSPs)
chr6 (369-453)||(13247400-13247484)
chr6 (380-433)||(32152934-32152987)
[»] chr4 (4 HSPs)
chr4 (193-273)||(26551319-26551399)
chr4 (328-463)||(4401878-4402015)
chr4 (174-280)||(14004030-14004137)
chr4 (203-271)||(28107799-28107867)
[»] chr5 (2 HSPs)
chr5 (190-284)||(35170568-35170662)
chr5 (355-435)||(33542455-33542535)
[»] chr2 (1 HSPs)
chr2 (207-273)||(20688652-20688718)
[»] chr8 (1 HSPs)
chr8 (374-435)||(8136341-8136402)
[»] chr3 (1 HSPs)
chr3 (355-435)||(1300853-1300934)
[»] chr1 (2 HSPs)
chr1 (370-415)||(14790791-14790836)
chr1 (368-457)||(17598437-17598526)


Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 5847845 - 5847382
Alignment:
Q  1 tcataatctcattccgactacatataacctttctcggtggggtcttcttcagaatcactagcagctctgtatgggtggttgttgtactaatgaagatgtc 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5847845 tcataatctcattccaactacatataacctttctcggtggggtcttcttcagaatcactagcagctctgtgtgggtggttgttgtactaatgaagatgtc 5847746  T
Q  101 aaccatttgtttatgcgatgcaannnnnnnn-gtacaatttagactttggtctcgcaatggatatgtttgatcatcacagtgaacccaactcacatttta 199  Q
    |||||||||||||||||||||||         |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  5847745 aaccatttgtttatgcgatgcaatttttttttgtacaatttagactttggtctcacaatggatatgtttgatcatcatagtgaacccaactcacatttta 5847646  T
Q  200 gaacatttacttcaatttggtcaattaggaggatcaacaaagaatcatcgatcaacaatgcatattttatggctctcatgtgtttctgtgatttggaagg 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5847645 gaacatttacttcaatttggtcaattaggaggatcaacaaagaatcatcgatcaacaatgcatattttatggctctcatgtgtttctgtgatttggaagg 5847546  T
Q  300 aaaggaatgatcgaatatttaagtaaatgagcattctttagatcaattgtttgaaaaaataaagcttcaacattttggttgttgaaagcgaaatacacta 399  Q
    ||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5847545 aaaagaatgatcgaatatttaagtaaatgagcattctttagatatattgtttgaaaaaatcaagcttcaacattttggttgttgaaagcgaaatacacta 5847446  T
Q  400 cttttgtttttgattaccattattggtggcttaatcgaatcatgtgcttaggagcaatctctta 463  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5847445 cttttgcttttgattaccattattggtggcttaatcgaatcatgtgcttaggagcaatctctta 5847382  T

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Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 369 - 453
Target Start/End: Complemental strand, 13247484 - 13247400
Alignment:
Q  369 acattttggttgttgaaagcgaaatacactacttttgtttttgattaccattattggtggcttaatcgaatcatgtgcttaggag 453  Q
    |||||||||| |||||||||| ||||||||||| |   |||||||||||||| |||||||||||| ||||| |||||||||||||    
T  13247484 acattttggtggttgaaagcggaatacactactatctattttgattaccattcttggtggcttaaacgaattatgtgcttaggag 13247400  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 32152987 - 32152934
Alignment:
Q  380 gttgaaagcgaaatacactacttttgtttttgattaccattattggtggcttaa 433  Q
    ||||||||| |||||| |||||||||||||||| ||||||| || |||||||||    
T  32152987 gttgaaagcaaaatacgctacttttgtttttgaataccattcttagtggcttaa 32152934  T

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Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 193 - 273
Target Start/End: Complemental strand, 26551399 - 26551319
Alignment:
Q  193 cattttagaacatttacttcaatttggtcaattaggaggatcaacaaagaatcatcgatcaacaatgcatattttatggct 273  Q
    ||||| ||| |||||||||||||||||||| |||||||||||| ||||| ||||||| ||||| |||||| ||||||||||    
T  26551399 catttcagaccatttacttcaatttggtcatttaggaggatcatcaaagcatcatcggtcaactatgcatcttttatggct 26551319  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 463
Target Start/End: Complemental strand, 4402015 - 4401878
Alignment:
Q  328 gagcattctttagatcaattgtttgaaaaaataaagcttcaa-cattttggttgttgaaagcgaaatacactacttttgtttttgattaccattattggt 426  Q
    ||||| |||||| | ||| || |||||||||| || |||||| ||||||||| ||||||| ||||||| |||||||||  ||||||||| | || |||||    
T  4402015 gagcactctttaaaccaactgcttgaaaaaattaaccttcaaacattttggtagttgaaaacgaaataaactacttttacttttgattatcgtttttggt 4401916  T
Q  427 ggc-ttaatcgaatcatgtgcttaggagcaatctctta 463  Q
    ||| ||||||  | ||||||||||  ||||||||||||    
T  4401915 ggctttaatccgaccatgtgcttaatagcaatctctta 4401878  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 280
Target Start/End: Original strand, 14004030 - 14004137
Alignment:
Q  174 tcacagtgaacccaactcacattttagaa-catttacttcaatttggtcaattaggaggatcaacaaagaatcatcgatcaacaatgcatattttatggc 272  Q
    |||| ||||| || ||||||||||| | | |||||| |||| | |||||| ||| ||||||    ||||||||||||||||||||| ||| |||||||||    
T  14004030 tcacggtgaatccgactcacattttgggatcatttatttcattatggtcatttaagaggatttgtaaagaatcatcgatcaacaattcattttttatggc 14004129  T
Q  273 tctcatgt 280  Q
    ||||||||    
T  14004130 tctcatgt 14004137  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 28107867 - 28107799
Alignment:
Q  203 catttacttcaatttggtcaattaggaggatcaacaaagaatcatcgatcaacaatgcatattttatgg 271  Q
    ||||||| |||||||||||| ||| |||||||| ||||| ||||||  ||||| |||||| || |||||    
T  28107867 catttacatcaatttggtcatttaagaggatcatcaaagtatcatcattcaactatgcatcttatatgg 28107799  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 190 - 284
Target Start/End: Complemental strand, 35170662 - 35170568
Alignment:
Q  190 tcacattttagaacatttacttcaatttggtcaattaggaggatcaacaaagaatcatcgatcaacaatgcatattttatggctctcatgtgttt 284  Q
    |||||||| ||| ||||| |||||||||||| | ||||||||||  |||| |||||| |||||| |||||||| || ||||||||| ||||||||    
T  35170662 tcacatttcagatcatttgcttcaatttggtaatttaggaggattcacaaggaatcaccgatcatcaatgcatcttgtatggctcttatgtgttt 35170568  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 33542455 - 33542535
Alignment:
Q  355 aaaataaagcttcaacattttggttgttgaaagcgaaatacactacttttgtttttgattaccattattggtggcttaatc 435  Q
    ||||| |||||||||| |||| || |||||||| ||| ||| |||||||   |||| ||||||||| || |||||||||||    
T  33542455 aaaattaagcttcaacgttttagtggttgaaagtgaactacgctactttctcttttaattaccattcttagtggcttaatc 33542535  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 20688718 - 20688652
Alignment:
Q  207 tacttcaatttggtcaattaggaggatcaacaaagaatcatcgatcaacaatgcatattttatggct 273  Q
    |||||||||| ||||| |||||||||||| ||||| ||||||| | | | |||||||||||||||||    
T  20688718 tacttcaattcggtcatttaggaggatcatcaaagcatcatcggttagctatgcatattttatggct 20688652  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 435
Target Start/End: Original strand, 8136341 - 8136402
Alignment:
Q  374 ttggttgttgaaagcgaaatacactacttttgtttttgattaccattattggtggcttaatc 435  Q
    ||||| |||||||||||||| | |||||||  |||| ||||||||||| |||||||||||||    
T  8136341 ttggtggttgaaagcgaaatgcgctactttcattttcgattaccattactggtggcttaatc 8136402  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 1300853 - 1300934
Alignment:
Q  355 aaaataaagcttcaa-cattttggttgttgaaagcgaaatacactacttttgtttttgattaccattattggtggcttaatc 435  Q
    ||||| ||||||||| | ||||||| ||||||||  || ||| |||||||   |||||||||||||| ||||||||||||||    
T  1300853 aaaattaagcttcaaactttttggtggttgaaagtaaagtactctactttctcttttgattaccattcttggtggcttaatc 1300934  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 415
Target Start/End: Complemental strand, 14790836 - 14790791
Alignment:
Q  370 cattttggttgttgaaagcgaaatacactacttttgtttttgatta 415  Q
    ||||||||| ||||||| |||||||||||| ||||| |||||||||    
T  14790836 cattttggtggttgaaatcgaaatacactaattttgattttgatta 14790791  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 457
Target Start/End: Original strand, 17598437 - 17598526
Alignment:
Q  368 aacattttggttgttgaaagcgaaatacactacttttgtttttgattaccattattggtggcttaatcgaatcatgtgcttaggagcaat 457  Q
    |||||||| || |||||||||||||||  ||||||||  ||||||  |||||| ||| |||||||||| |||  ||| ||| ||||||||    
T  17598437 aacattttcgtggttgaaagcgaaatattctacttttacttttgacaaccatttttgatggcttaatccaattttgtacttgggagcaat 17598526  T

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