View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13773_low_30 (Length: 205)
Name: NF13773_low_30
Description: NF13773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13773_low_30 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 40899436 - 40899624
Alignment:
| Q |
17 |
attgttggcacaatgttgatcaggatcgtggagagtgtaggcgagggtgtgacacatctaaaaccaggcgatcatgccctgcctgtattcacaggggagt |
116 |
Q |
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| T |
40899436 |
attgtcggcacaatgttgatcaggatcgtggagagtgtaggcgagggtgtgacacatctaacaccaggcgatcatgccctgcttgtattcacaggggagt |
40899535 |
T |
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| Q |
117 |
gtggggactgtccacattgtaagtcggaggaaagcaacatgtgtgatcttcttaggatcaacactgacaggggtgttatgatcaatgac |
205 |
Q |
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| T |
40899536 |
gtggggactgtccacattgtatgtcggaggaaagcaacatgtgtgatcttcttaggatcaacactgacaggggtgttatgatcaatgac |
40899624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 40904002 - 40904190
Alignment:
| Q |
17 |
attgttggcacaatgttgatcaggatcgtggagagtgtaggcgagggtgtgacacatctaaaaccaggcgatcatgccctgcctgtattcacaggggagt |
116 |
Q |
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| T |
40904002 |
attgttggcctaatgttgatcaggattgtggagagcataggcgagggtgtgacacatctaaaaccaggcgatcatgccctgcctgtattcacaggggagt |
40904101 |
T |
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| Q |
117 |
gtggggactgtccacattgtaagtcggaggaaagcaacatgtgtgatcttcttaggatcaacactgacaggggtgttatgatcaatgac |
205 |
Q |
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| T |
40904102 |
gtggggactgtccacattgtaagtcggaggaaagcaacatgtgtgatcttcttaggatcaacactgacaggggtgttatgatcaatgac |
40904190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 28 - 205
Target Start/End: Original strand, 40880513 - 40880690
Alignment:
| Q |
28 |
aatgttgatcaggatcgtggagagtgtaggcgagggtgtgacacatctaaaaccaggcgatcatgccctgcctgtattcacaggggagtgtggggactgt |
127 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40880513 |
aatgttgatcaggattgtggagagtgtaggtgagggtgtgactcatctgaaaccaggggatcatgccctgcctgtattcacaggggagtgtggggactgt |
40880612 |
T |
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| Q |
128 |
ccacattgtaagtcggaggaaagcaacatgtgtgatcttcttaggatcaacactgacaggggtgttatgatcaatgac |
205 |
Q |
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| T |
40880613 |
ccacattgtaagtcagaggaaagcaacatgtgtgatcttcttaggatcaacactgacaggggtgttatgatcaatgac |
40880690 |
T |
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