View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13773_low_4 (Length: 553)
Name: NF13773_low_4
Description: NF13773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13773_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-141; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 283 - 537
Target Start/End: Complemental strand, 10103450 - 10103196
Alignment:
| Q |
283 |
aattattgtacctctttccctcctgatatgagaaaatcagggtaatctttcataatagactcaacaatttctttgagaacttcaacatcctataatatag |
382 |
Q |
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| T |
10103450 |
aattattgtacctctttccctcctgatatgagaaaatcagggtaatctttcataatagactcaacaatttctttgagaacttcaacatcctataatatag |
10103351 |
T |
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| Q |
383 |
agaagcaacaacatatataagtgtatataatttcttttacataagatgtgttaattaatctagaatgaatctaattcatacctctctatttttcacacgg |
482 |
Q |
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| T |
10103350 |
agaagcaacaacatatataagtgtatataatttcttttacataagatgtgttaattaatctagaatgaatctaattcatacctctctatttttcacacgg |
10103251 |
T |
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| Q |
483 |
cggtagtgtaccgtgaaacaaaacgtattatcctcaatggtcgaaccatttatca |
537 |
Q |
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| T |
10103250 |
cggtagtgtaccgtgaaacaaaacgtattatcctcaatggtcgaaccatttatca |
10103196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 10103782 - 10103642
Alignment:
| Q |
19 |
gtatattggtagaacatcatcaaaggtgttatatccaagagtgtcaagaaaatacattagagcatcacctttattccagtttacatttgggcgtatctcc |
118 |
Q |
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| T |
10103782 |
gtatattggtagaacatcatcaaaggtgttatatccaagagtgtcaagaaaatacattagagcatcgcctttattccagttcacatttgggcgtatctcc |
10103683 |
T |
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| Q |
119 |
attatctaatataaaacattaaacttatgttaagtttaaga |
159 |
Q |
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| T |
10103682 |
ataatctaatataaaacattcaacttatgttaagtttaaga |
10103642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 10103559 - 10103515
Alignment:
| Q |
159 |
atttaaagacagataaataagagagatatttcattttctctgtca |
203 |
Q |
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| T |
10103559 |
atttaaagactgataaataagaaagagatttcattttctccgtca |
10103515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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