View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13773_low_6 (Length: 511)
Name: NF13773_low_6
Description: NF13773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13773_low_6 |
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| [»] scaffold0114 (1 HSPs) |
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| [»] scaffold0202 (2 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0114 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 5986 - 5790
Alignment:
| Q |
14 |
aggtacgtgcggtctctaaacatatgtccattcttcatgatggggataatgtcatctcggacccaattgagatagaggaccatgttgtgtcatattttca |
113 |
Q |
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| T |
5986 |
aggtacgtgcggtttctaaacatatgtccattcttcatgatagggataatgtcatctcggacccaattgagatagaggagcatgttgtgtcatattttca |
5887 |
T |
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| Q |
114 |
gtctatttttagcgttgataatgattgtggggctaataatatggtagagcaattggttccaagattggttacggaggctgagaatgatttattatgt |
210 |
Q |
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| T |
5886 |
gtctatttttagcgttgataatgattgtggggctaataatatggtagagcaattggttccaagattggttacggaggctgagactgatttattatgt |
5790 |
T |
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Target: scaffold0202 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 214 - 389
Target Start/End: Complemental strand, 19032 - 18856
Alignment:
| Q |
214 |
tcacctatccgtctgaccagcttatatggaccatagaaacgcttggcaagcttctgaatcggatgcca-aaattcaatacgggcgcatcaagacgaaaac |
312 |
Q |
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| T |
19032 |
tcacctatccttctgaccagcttatagggaccatagaaacaattggcaaacttcttaatcggatgccataaattcaatacaggtgcagcaagacaaaaac |
18933 |
T |
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| Q |
313 |
agaagtaaaaattcaatttcaatgatgttatccaagttaatccttttgactct-cgattcataatatgccaagattca |
389 |
Q |
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| T |
18932 |
agaaataaaaattcaatttcaatgatgttatcc-agttaatccttttgactctcctattcataatatgccaaaattca |
18856 |
T |
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Target: scaffold0202; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 396
Target Start/End: Complemental strand, 18842 - 18776
Alignment:
| Q |
328 |
atttcaatgatgttatccaagttaatccttttgactctcgattcataatatgccaagattcataaaaaa |
396 |
Q |
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| T |
18842 |
atttcaatgatgttatcta-gttaatccttttgactctac-ttcataaaatgccaaaattcataaaaaa |
18776 |
T |
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Target: scaffold0018 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 242 - 432
Target Start/End: Complemental strand, 173038 - 172846
Alignment:
| Q |
242 |
gaccatagaaacgcttggcaagcttctgaatcggatgccaaaattcaatacgggcgcatcaagacgaaaacagaagtaaaaattcaatttcaatgatgtt |
341 |
Q |
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| T |
173038 |
gaccatataaacgcttggcaaacttcttaatcggatgccaaaattcaatacggatgcaacaagacaaaaacagaagtacaaattcaatttcaatgaggtt |
172939 |
T |
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| Q |
342 |
atccaagttaatccttttgactct-cgattcataatatgccaagattcataaaaaa---ggtctaatcgaaattgtttaactatccattatcttt |
432 |
Q |
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| T |
172938 |
at-ctagttaatccttttgactctccaacacataatatgccaaaatccataaaaaaaagggtctaactgaaattgtttaa-tatccattatcttt |
172846 |
T |
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Target: chr6 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 214 - 389
Target Start/End: Original strand, 31044372 - 31044547
Alignment:
| Q |
214 |
tcacctatccgtctgaccagcttatatggaccatagaaacgcttggcaagcttctgaatcggatgccaaaattcaatacgggcgcatcaagacgaaaaca |
313 |
Q |
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| T |
31044372 |
tcacctatccgtctgactggcttatagagatcacagaaacacttggcaagcttctgaatcagaatccaaaattcaatacggccatagcaagaccaaaaca |
31044471 |
T |
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| Q |
314 |
gaagtaaaaattcaatttcaatgatgttatccaagttaatccttttgactct-cgattcataatatgccaagattca |
389 |
Q |
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| T |
31044472 |
gaagtaaaaatccaatttcaatgatgttatcc-agtttatccttttgactctccaatgcataatatgccaaaattca |
31044547 |
T |
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