View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13774_low_2 (Length: 330)
Name: NF13774_low_2
Description: NF13774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13774_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 8e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 106 - 315
Target Start/End: Complemental strand, 37089205 - 37088990
Alignment:
| Q |
106 |
gttgcaggtaatcactgtattgatgggattaggatt------gaaaaccatggtggaattcctgagcgagtaggtcaaaacaagatttatttgacatatt |
199 |
Q |
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| T |
37089205 |
gttgtaggtaatcactctattgatgggattaggagtctaaatgaaaaccatggtggaattcttgagcgagtaggtcaaaacaagatttatttgatatatt |
37089106 |
T |
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| Q |
200 |
ttgtacacagaatagaatagaccagccgattaaggtagacaagttttgtagataactgtgtttgatgtgtaataacaagtgaaaattgagagacaaagtg |
299 |
Q |
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| T |
37089105 |
ttgtacacataatagaatagaccagccgattaaggtagacaagttttgtagataaatgtgtttgatatgtaataacaagtgaaaattgagagacaaagtg |
37089006 |
T |
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| Q |
300 |
aaagtgatttcaatat |
315 |
Q |
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| T |
37089005 |
aaagtgatttcaatat |
37088990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 37090007 - 37089915
Alignment:
| Q |
9 |
agaggacaaaataatcttataaccttaaaaacaataataatttaaaacatttagtacctgtttcgtgccaaatccaacatgtattcatttagtacc |
104 |
Q |
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| T |
37090007 |
agaggacaaaataatct---aaccttaaaaacaataataatttaaaacatttagtacctgtttcgtgccaaatccaacatgtattcgtttagtacc |
37089915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 38178064 - 38177989
Alignment:
| Q |
233 |
ggtagacaagttttgtagataactgtgtttgatgtgtaataacaagtg-aaaattgagagac--aaagtgaaagtg |
305 |
Q |
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| T |
38178064 |
ggtagataaattttgtagataactgtgttagatatgtaataaaaaatgaaaaaatgagagacataaagtgaaagtg |
38177989 |
T |
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