View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13774_low_4 (Length: 226)
Name: NF13774_low_4
Description: NF13774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13774_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 16965906 - 16966097
Alignment:
| Q |
17 |
aatatgctcagcaatagaaataagtttgtcaagnnnnnnncaatagaatcaaatgcatgattaagcaaaaagacattaataactgaaagcgtttaaagta |
116 |
Q |
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| T |
16965906 |
aatatgctcagcaatagaaataagtttgtcaagaaaagaacaatagaatcaaatgcatgattaagcaaaaagacattaataactgaaagcgtttaaagta |
16966005 |
T |
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| Q |
117 |
atcaaagttaatcaccaatcagatatgtatttaaagagatcatcagttaaagagaagtcaatatcaatgccttctagttgaccacaacttcg |
208 |
Q |
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| T |
16966006 |
atcaaagttaatcaccaatcagatatgtatttaaagagatcatcagttaaagagaagtcaatatcaatgccttctagttgaccacaacttcg |
16966097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 58 - 208
Target Start/End: Original strand, 16955438 - 16955579
Alignment:
| Q |
58 |
aatagaatcaaatgcatgattaagcaaaaagacattaataactgaaagcgtttaaagtaatcaaagttaatcaccaatcagatatgtatttaaagagatc |
157 |
Q |
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| T |
16955438 |
aatagaatcaaatacatgattaagcaaaaagacattaatacttgaaagagtctaaggt---------taatcaccaatcagctatgtatttaaagagatc |
16955528 |
T |
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| Q |
158 |
atcagttaaagagaagtcaatatcaatgccttctagttgaccacaacttcg |
208 |
Q |
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| T |
16955529 |
atcggttaaaaaaaactcaatatcaatctcttgaagttgaccacaacttcg |
16955579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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