View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13775_high_11 (Length: 396)
Name: NF13775_high_11
Description: NF13775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13775_high_11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 158 - 396
Target Start/End: Complemental strand, 32490672 - 32490434
Alignment:
| Q |
158 |
tgtagagtttacttggtccaatggaaggagatggaatatacataaagataggaggctagatagatcaatgtgtgatcaattgtggttgaatttgtgttgt |
257 |
Q |
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| T |
32490672 |
tgtagagtttacttggtccaatggaaggagatggaatatacataaagaaaggaggctagatagatcaatgtgtgatcaattgtggttgaatttgtgttgt |
32490573 |
T |
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| Q |
258 |
tccttgtcatgctaaaccctcacaaatcataaatcagatcatttcccctattgttggaatttcaagttacttcaacaatttttgcttcacaatttaaatt |
357 |
Q |
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| T |
32490572 |
tccttgtcatgctaaaccctcacaaatcataaatcagatcatttcccctattgttggaatttcaagttacttcaacattttttgcttcacaattcaaatt |
32490473 |
T |
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| Q |
358 |
tcaactgatgggggcacttcattttgactgcaaggaaat |
396 |
Q |
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| T |
32490472 |
tcaactgatgtgggcacttcattttgactgcaaggaaat |
32490434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 7 - 158
Target Start/End: Complemental strand, 32491044 - 32490893
Alignment:
| Q |
7 |
aagaaggagttgaaaattaaaaatgaactagagacaagaaaatgaaggagcaattggaggatgaaatatatgaagagctgatcgttcatcaagttcaaag |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32491044 |
aagaaggagttgaaaattaaaaatgaactagagacaagaaaatgaaggagcaattggaggatgaaatatatgaagagctgatcgttcatcaagttcaaaa |
32490945 |
T |
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| Q |
107 |
aagatttgaagaaacaaatgtaatggaccaggaggtagagagctctcatgat |
158 |
Q |
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| T |
32490944 |
aagatttgaagaaacaaatgtaatggaccaggaggtagagagctctcatgat |
32490893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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