View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13775_high_16 (Length: 305)
Name: NF13775_high_16
Description: NF13775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13775_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 48492283 - 48492478
Alignment:
| Q |
1 |
tggcacctctttaactggatttaaatcttaatcctacattttgtagaaatttggcctcttctattagacccaatcctcatgcttcagagaataacacatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48492283 |
tggcacctctttaactggatttaaatcttaatcctacattttgtagaaatttggcctcttctattagacccaatcctcatgcttcagagaataacacatg |
48492382 |
T |
|
| Q |
101 |
tgctaagaaaccatgaatatgcacttttgattaaacatgatcactcaccaatctgattcttaaatttcaaaaacatttcttttgtacagaaaacaa |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48492383 |
tgctaagaaaccatgaatatgcacttttgattaaacatgatcactcaccaatctgattcttaaatttcaaaaacattttttttgtacagaaaacaa |
48492478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 268
Target Start/End: Original strand, 48492526 - 48492558
Alignment:
| Q |
236 |
gacattacatccgatcaagcagcagaagaaaac |
268 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
48492526 |
gacatttcatccgatcaagcagcagaagaaaac |
48492558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University