View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13775_high_17 (Length: 302)
Name: NF13775_high_17
Description: NF13775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13775_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 284
Target Start/End: Original strand, 45103218 - 45103488
Alignment:
| Q |
14 |
tccattagttgattataattatatctaacccttaaagcaggtaagaaatgtctctctggccctataggttgtccaaccaactctcaattgttgaatcgag |
113 |
Q |
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| T |
45103218 |
tccattagttgattataattatatctaacccttaaagcaggtaagaaatgtctctctggccctataggttgtccaaccaactctcaattgttgaatcgag |
45103317 |
T |
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| Q |
114 |
ctacaaccctgtccaacagctgagattttgttggacaatttcacggccgtagaaaatttgggttgagtaagcatacattattaccttgaatattaagtca |
213 |
Q |
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| T |
45103318 |
ctacaaccctgtccaacagctgagattttgttggacaatttcacggccgtagaaaatttgggttgagtaagcatacattattaccttgaatattaagtca |
45103417 |
T |
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| Q |
214 |
ccttgacaaggaccagtgaagatagtcgactgaatgacgaaggagaaaccttgaggaacaaggataacatt |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45103418 |
ccttgacaaggaccagtgaagatagtcgactgaatgacgaaggagaaaccttgaggaacaaggataacatt |
45103488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 38660413 - 38660341
Alignment:
| Q |
212 |
caccttgacaaggaccagtgaagatagtcgactgaatgacgaaggagaaaccttgaggaacaaggataacatt |
284 |
Q |
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| T |
38660413 |
cacctttacaaggaccagtgaaaatagtagattgaacaatgaaggagaaaccaggaggaacaaatataacatt |
38660341 |
T |
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