View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13775_high_20 (Length: 288)
Name: NF13775_high_20
Description: NF13775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13775_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 37619600 - 37619883
Alignment:
| Q |
1 |
aagaaatgtaaatgagtttaaaaagtaaattgctatgttgttaaaagtgcacaaatgtaaaagactttgaaaattaattgcagaaacttataagtacata |
100 |
Q |
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| T |
37619600 |
aagaaatataaatgagtttaaaaagtaaattgctatgttgttaaaagtgcacaaatgtaaaagactttgaaaattaattgcagaaacttataagtacata |
37619699 |
T |
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| Q |
101 |
aatataaatgaaaatcatgtaaatcaaactaagagtaaagcgtgttaaattaaatttgacnnnnnnntaaatgatctacgtaattaaataccaaaaatat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |
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| T |
37619700 |
aatataaatgaaaatcatgtaaatcaaactaagagtaaaccgtgttaaattaaatttgacaaaaaaataaatgacctacgtaatcaaataccaaaaatag |
37619799 |
T |
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| Q |
201 |
acgatcatttagagttgtatgtgatttttgaaatgcattaagcaactctcgttacaaagtcttcaaaccttatagagaattatc |
284 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37619800 |
acgatcatttagagttttatgtgatttttgaaatgcattaagcaactctcgttacaaagtcttcaaaccttatagagaagtatc |
37619883 |
T |
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