View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13775_high_23 (Length: 249)
Name: NF13775_high_23
Description: NF13775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13775_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 35322225 - 35322066
Alignment:
| Q |
1 |
gttaggagttatagtatcaatggtgctacttttagaagagactttgctgttgctatggtgaaactgagtaaaattaatcctctaacagggactaatgggg |
100 |
Q |
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| T |
35322225 |
gttaggagttatagtaccaatggtgctacttttagaagagactttgctgttgctatggtgaaactgagtaaaattaatcctctaactgggactaatgggg |
35322126 |
T |
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| Q |
101 |
agattagaaagaattgtaggcttgtgaattgatcttgaatattggagggcttataagcaatt |
162 |
Q |
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| T |
35322125 |
agattagaaagaattgtaggcttgtgaattgatcttga--attggagggcttataagcaatt |
35322066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 35307224 - 35306977
Alignment:
| Q |
1 |
gttaggagttatagtatcaatggtgctacttttagaagagactttgctgttgctatggtgaaactgagtaaaattaatcctctaacagggactaatgggg |
100 |
Q |
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| T |
35307224 |
gttaggagttatagtaccaatggtgctactttttctagagactttgccgttgctatggtgaaactgagtaaaattagtcctctaactgggactaatgggg |
35307125 |
T |
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| Q |
101 |
agattagaaagaattgtaggcttgtgaattgatcttgaatattggagggcttataagcaattaaattaatatttaatgtg---ttg---------gaggt |
188 |
Q |
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| T |
35307124 |
agattagaaagaattgcaggcttgtgaattgatcttga--attggagggcttataagcaattaaataaagattt-ttgtgggattgattaattacaaggt |
35307028 |
T |
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| Q |
189 |
cttggtcataaaggttgactagatcttggacacatcggcaattgtagtatt |
239 |
Q |
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| T |
35307027 |
ctaagtcataaaggttgactagatcttggacacattggcaattgtagtatt |
35306977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 35311567 - 35311402
Alignment:
| Q |
1 |
gttaggagttatagtatcaatggtgctacttttagaagagactttgctgttgctatggtgaaactgagtaaaattaatcctctaacagggactaatgggg |
100 |
Q |
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|||||||||||||||| ||||| ||| ||||| | ||||||||||| |||||||||||||||||||||||| | |||||| || ||||||||||||| |
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| T |
35311567 |
gttaggagttatagtaccaatgaggctgctttttctacagactttgctgctgctatggtgaaactgagtaaaatcagtcctctcactgggactaatgggg |
35311468 |
T |
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| Q |
101 |
agattagaaagaattgtaggcttgtgaattgatcttgaatattggagggcttataagcaattaaat |
166 |
Q |
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| T |
35311467 |
agatcagaaagaattgtaggcttgtgaattgatattgaatattggagggcttataagcaattaaat |
35311402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 35280070 - 35279949
Alignment:
| Q |
9 |
ttatagtatcaatggtgctacttttagaagagactttgctgttgctatggtgaaactgagtaaaattaatcctctaacagggactaatggggagattaga |
108 |
Q |
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||||||||| |||||| | |||||||||||||||||||| ||||||||||||| |||| | ||||| |||||| ||||||||||||||||| |||||| |
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| T |
35280070 |
ttatagtataaatggttttgcttttagaagagactttgcttttgctatggtgaagatgagcagaattagtcctctcacagggactaatggggaaattaga |
35279971 |
T |
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| Q |
109 |
aagaattgtaggcttgtgaatt |
130 |
Q |
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|||||||| || |||||||||| |
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| T |
35279970 |
aagaattgcagacttgtgaatt |
35279949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 35289395 - 35289296
Alignment:
| Q |
29 |
cttttagaagagactttgctgttgctatggtgaaactgagtaaaattaatcctctaacagggactaatggggagattagaaagaattgtaggcttgtgaa |
128 |
Q |
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|||||| |||||||||||| | |||||||||||| |||||| ||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35289395 |
cttttaaaagagactttgcagctgctatggtgaagatgagtagaattagtcctctaactgggactaatggggagattagaaagaattgcaggcttgtgaa |
35289296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 35275292 - 35275179
Alignment:
| Q |
20 |
atggtgctacttttagaagagactttgctgttgctatggtgaaactgagtaaaattaatcctctaacagggactaatggggagattagaaagaattgtag |
119 |
Q |
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|||||||| ||||| ||||||||||||| |||||||||||| |||||||||||| |||||| || ||||||||||| ||||| ||||||||||| || |
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| T |
35275292 |
atggtgctgctttttctagagactttgctgctgctatggtgaagatgagtaaaattagtcctcttactgggactaatggtgagatcagaaagaattgcag |
35275193 |
T |
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| Q |
120 |
gcttgtgaattgat |
133 |
Q |
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| T |
35275192 |
gattgtgaattgat |
35275179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 35289270 - 35289224
Alignment:
| Q |
193 |
gtcataaaggttgactagatcttggacacatcggcaattgtagtatt |
239 |
Q |
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| T |
35289270 |
gtcataaaggttgactagatcttggacacattggcaattgtagtatt |
35289224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 35322024 - 35321978
Alignment:
| Q |
193 |
gtcataaaggttgactagatcttggacacatcggcaattgtagtatt |
239 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
35322024 |
gtcataaaggttgactagatcttgaacacattggcaattgtagtatt |
35321978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 35275056 - 35275019
Alignment:
| Q |
186 |
ggtcttggtcataaaggttgactagatcttggacacat |
223 |
Q |
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| T |
35275056 |
ggtctaggtcataaaggttgactagatcttggacacat |
35275019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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