View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13775_high_3 (Length: 534)
Name: NF13775_high_3
Description: NF13775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13775_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 517
Target Start/End: Original strand, 39510065 - 39510564
Alignment:
| Q |
8 |
cgaagaatattaacggttcagaatcagacatgttccttatgtgtagaacaaaaatgtccgcaatattcaatattcnnnnnnnnnnnnngactcaaacaat |
107 |
Q |
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| T |
39510065 |
cgaacaatattaacggttcagaatcagacatgttccttatttgtagaacaaaaatgtccgcaatattcaatattctttttttctttttgactcaaacaat |
39510164 |
T |
|
| Q |
108 |
attcagtattcctttcaaatttgttatttgcacgttcatttta-ctacattgatgatgcagaatagtgnnnnnnnatccaactaaaaatagtagtgggta |
206 |
Q |
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| T |
39510165 |
attcagtattcctttcaaatttgttatttgcacgttcattttaactacattgatgatgcagaatagtgtttttttatccaactaaaaatagtagtgggta |
39510264 |
T |
|
| Q |
207 |
caaattttttacaaaagtagcgcgtacaaaattaaaatgatttcgttttgtccacnnnnnnnnnnnnnnnnnncttataaaaatgattcattgcaaacta |
306 |
Q |
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| T |
39510265 |
caaatttttgacaaaagtagcgcgtacaaaattaaaatgatttcgttttgtccac------------atatatcttataaaaatgattcattgcaaacta |
39510352 |
T |
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| Q |
307 |
attttaaccacataaaaccaaatacatgatagtatcatagtaataacaaaaatttcatgctatctg-ccnnnnnnnnnttaacaaatttatgctagccac |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| | ||||||||||||||| ||||| |
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| T |
39510353 |
attttaaccacataaaaccaaatacatgatagtatcatagtaataacaaaaaatttatgctatctgacaaaaaaataaataacaaatttatgctggccac |
39510452 |
T |
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| Q |
406 |
ataatcgatttgcttttcgaaaaatacctccataagattcaattcttgtgccagtgaaagccatcaacatttttgaagaataatccaataaattttattt |
505 |
Q |
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| T |
39510453 |
ataatcgatttgcttttcgaaaaatacctccataagattcaattcttgtgccagtgaaagccatcaacatttttgaagaataatccaataaattttattt |
39510552 |
T |
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