View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13775_high_8 (Length: 435)
Name: NF13775_high_8
Description: NF13775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13775_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 425
Target Start/End: Original strand, 1832731 - 1833139
Alignment:
| Q |
17 |
actatacactccaacaacaacaacctcaaatttcaaatattgaacaagaataacatcacaaagttcatctcagaaacccttttactcttctcttttcaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1832731 |
actatacactccaacaacaacaacctcaaatttcaaatattgaacaagaataacatcacaaagttcatctcagaaacccttttactcttctcttttcaat |
1832830 |
T |
|
| Q |
117 |
tctctttcatctccaaaatccacttttacactaacatatctaacagaaatagatttccagaaaataaacaagaaaacaaaatctacataatcaagattgg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1832831 |
tctctttcatctccaaaatccacttttacactaacatatctaacagaaatagatttccagaaaataaacaagaaaacaaaatctacataatcaagattgg |
1832930 |
T |
|
| Q |
217 |
aagaaggaagatatcgagtggnnnnnnnntcaaaattaacaaatatttttggatgaaatatagaaactgaattnnnnnnnnnnnnnttgatcaagtagag |
316 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1832931 |
aagaaggaagatatcgagtggaaaaaaaatcaaaattaacaaatatttttggatgaaatatagaaactgaattaaaaaaaaaaaaattgatcaagtagag |
1833030 |
T |
|
| Q |
317 |
gtgaccgaatagaaatttgtggggatgagggatcatcttagtcatgttcacttgatttttaaatttataagcattttttgatagatagtttagatccacg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1833031 |
gtgaccgaatagaaatttgtggggatgagggatcatcttagtcatgttcacttgatttttaaatttataagcattttttgatagatagtttagatccacg |
1833130 |
T |
|
| Q |
417 |
attattcat |
425 |
Q |
| |
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||||||||| |
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| T |
1833131 |
attattcat |
1833139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 425
Target Start/End: Original strand, 1867174 - 1867582
Alignment:
| Q |
17 |
actatacactccaacaacaacaacctcaaatttcaaatattgaacaagaataacatcacaaagttcatctcagaaacccttttactcttctcttttcaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1867174 |
actatacactccaacaacaacaacctcaaatttcaaatattgaacaagaataacatcacaaagttcatctcagaaacccttttactcttctcttttcaat |
1867273 |
T |
|
| Q |
117 |
tctctttcatctccaaaatccacttttacactaacatatctaacagaaatagatttccagaaaataaacaagaaaacaaaatctacataatcaagattgg |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1867274 |
tctctttcatctccaaaatccacttttacactaacatatctaacagaaatagatttccagaaaataaacaagaaaacaaaatctacataatcaagattgg |
1867373 |
T |
|
| Q |
217 |
aagaaggaagatatcgagtggnnnnnnnntcaaaattaacaaatatttttggatgaaatatagaaactgaattnnnnnnnnnnnnnttgatcaagtagag |
316 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1867374 |
aagaaggaagatatcgagtggaaaaaaaatcaaaattaacaaatatttttggatgaaatatagaaactgaattaaaaaaaaaaaaattgatcaagtagag |
1867473 |
T |
|
| Q |
317 |
gtgaccgaatagaaatttgtggggatgagggatcatcttagtcatgttcacttgatttttaaatttataagcattttttgatagatagtttagatccacg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1867474 |
gtgaccgaatagaaatttgtggggatgagggatcatcttagtcatgttcacttgatttttaaatttataagcattttttgatagatagtttagatccacg |
1867573 |
T |
|
| Q |
417 |
attattcat |
425 |
Q |
| |
|
||||||||| |
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|
| T |
1867574 |
attattcat |
1867582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 8518173 - 8518215
Alignment:
| Q |
92 |
acccttttactcttctcttttcaattctctttcatctccaaaa |
134 |
Q |
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|||||||||| ||||||| |||||||||||| ||||||||||| |
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| T |
8518173 |
acccttttacccttctctcttcaattctcttccatctccaaaa |
8518215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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