View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13775_low_1 (Length: 721)

Name: NF13775_low_1
Description: NF13775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13775_low_1
NF13775_low_1
[»] chr1 (3 HSPs)
chr1 (222-721)||(24469298-24469803)
chr1 (1-208)||(24470661-24470868)
chr1 (1-98)||(30828912-30829009)
[»] chr5 (5 HSPs)
chr5 (1-208)||(37094263-37094470)
chr5 (1-188)||(26319704-26319891)
chr5 (131-188)||(43387867-43387924)
chr5 (133-208)||(36359080-36359155)
chr5 (137-190)||(38641214-38641267)
[»] chr2 (2 HSPs)
chr2 (1-208)||(33367519-33367727)
chr2 (131-188)||(25715856-25715913)
[»] chr8 (5 HSPs)
chr8 (124-202)||(36403640-36403718)
chr8 (131-202)||(41530976-41531047)
chr8 (1-100)||(16704565-16704664)
chr8 (131-208)||(7970223-7970300)
chr8 (130-211)||(24628079-24628159)
[»] chr4 (3 HSPs)
chr4 (131-202)||(42660165-42660236)
chr4 (133-201)||(50391632-50391700)
chr4 (142-200)||(7817196-7817254)
[»] scaffold0016 (1 HSPs)
scaffold0016 (131-202)||(205597-205667)
[»] chr3 (3 HSPs)
chr3 (133-208)||(48304573-48304648)
chr3 (151-208)||(8735720-8735777)
chr3 (151-208)||(9087961-9088018)


Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 222 - 721
Target Start/End: Complemental strand, 24469803 - 24469298
Alignment:
Q  222 taatactctaaaatatatgtatgtggaccataaccctagacagctaaaccccaaaaatcaacatgtgca----acccacaaagtccataccatgagggaa 317  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  24469803 taataatctaaaatatatgtgtgtggaccataaccctagacagctaaaccccaaaaatcaacatgtgcatgcaacccacaaagtccataccatgagggaa 24469704  T
Q  318 ctaaatgcaaccctgaaacatattaacacaataaacataacactaaatcaaaatgaatgaaaaccattaccttcatcagaatggcgtcgtctaattaatc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24469703 ctaaatgcaaccctgaaacatattaacacaataaacataacactaaatcaaaatgaatgaaaaccattaccttcatcagaatggcgtcgtctaattaatc 24469604  T
Q  418 tccaagataatatacacagattagctttaannnnnnnnnnnnnnnatataccaatagattagctttcatttatactccaatccacctcatctgtgtttag 517  Q
    ||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24469603 tccaagataatatacacagattagctttaattttatttttttttgatataccaatagattagctttcatttatactccaatccacctcatctgtgtttag 24469504  T
Q  518 ttattaaaacgtagaaa-taagttaccaaaaccccatcaaaatggtaag-aaaaagattaatgactaaaaaggaaccacttgagtattatttttgtcaaa 615  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24469503 ttattaaaacgttgaaattaagttaccaaaaccccatcaaaatggtaagaaaaaagattaatgactaaaaaggaaccacgtgagtattatttttgtcaaa 24469404  T
Q  616 ataatttgtatcattattgatcatgcaactgtattattaaagtcaaatcnnnnnnnngacggcatcaaagtcaaatcttattaaacacaaacttttttca 715  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  24469403 ataatttgtatcattattgatcatgcaactgtattattaaagtcaaatcttttttttgacggcatcaaagtcaaatcttattaaacacaaacttttttca 24469304  T
Q  716 acaaaa 721  Q
    ||||||    
T  24469303 acaaaa 24469298  T

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Target: chr1; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 24470868 - 24470661
Alignment:
Q  1 tcagttgtccgaatatttgctgcttagactttttaaaatgctgttctttgtaagctacgtcgggaaggacttgtctttgttaatagtgctgttttgttca 100  Q
    |||||| ||| |||||||||||||||| ||||||| ||| ||||||||||||||||| || |||||  ||||||||||||||||||| ||||| ||||||    
T  24470868 tcagttatcctaatatttgctgcttagtctttttacaattctgttctttgtaagctaagttgggaataacttgtctttgttaatagttctgttatgttca 24470769  T
Q  101 gaatctaaaatgccannnnnnnnatggttttaatgcaatccggattacgtaatccggaatgtaaaggggcatttttgtaaattttacaggacgtgcgaga 200  Q
    |||||||||||  ||        |||||  |||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||| || || |||    
T  24470768 gaatctaaaatttcattttttttatggtcctaatgcaatctggattacgtaatccggaatgcaaaggggcatttttggaaattttacagggcgcgcaaga 24470669  T
Q  201 agtcaaca 208  Q
    ||||||||    
T  24470668 agtcaaca 24470661  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 30829009 - 30828912
Alignment:
Q  1 tcagttgtccgaatatttgctgcttagactttttaaaatgctgttctttgtaagctacgtcgggaaggacttgtctttgttaatagtgctgttttgtt 98  Q
    |||||||| | |||||||||||||||||||||||| |||  |||| ||||||||||| || ||||| ||||||||||| |||||||| ||||| ||||    
T  30829009 tcagttgttctaatatttgctgcttagactttttacaattatgttttttgtaagctaagttgggaatgacttgtctttattaatagttctgttatgtt 30828912  T

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Target: chr5 (Bit Score: 120; Significance: 5e-61; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 37094470 - 37094263
Alignment:
Q  1 tcagttgtccgaatatttgctgcttagactttttaaaatgctgttctttgtaagctacgtcgggaaggacttgtctttgttaatagtgctgttttgttca 100  Q
    |||||||||| |||||||||||||||| ||||||| ||| ||||||||||||||||| || ||||| |||||||||||||||||||| ||||| ||||||    
T  37094470 tcagttgtcctaatatttgctgcttaggctttttacaattctgttctttgtaagctaagttgggaatgacttgtctttgttaatagttctgttatgttca 37094371  T
Q  101 gaatctaaaatgccannnnnnnnatggttttaatgcaatccggattacgtaatccggaatgtaaaggggcatttttgtaaattttacaggacgtgcgaga 200  Q
    ||||||||||| |||        ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||| || ||||||    
T  37094370 gaatctaaaattccattttttttatggtcttaatgcaatccggattacgtaatccagaatgcaaaggggcatttttgaaaattttacagggcgcgcgaga 37094271  T
Q  201 agtcaaca 208  Q
    ||||||||    
T  37094270 agtcaaca 37094263  T

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Target: chr5; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 26319704 - 26319891
Alignment:
Q  1 tcagttgtccgaatatttgctgcttagactttttaaaatgctgttctttgtaagctacgtcgggaaggacttgtctttgttaatagtgctgttttgttca 100  Q
    |||||||||| ||||||| |||||||| ||||||| ||| ||||||||||||||||| || | ||| |||||||||||||||||||| ||||| ||||||    
T  26319704 tcagttgtcctaatatttactgcttaggctttttacaattctgttctttgtaagctaagttgagaatgacttgtctttgttaatagttctgttatgttca 26319803  T
Q  101 gaatctaaaatgccannnnnnnnatggttttaatgcaatccggattacgtaatccggaatgtaaaggggcatttttgtaaattttaca 188  Q
    ||||||||||| |||        |||||  ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  26319804 gaatctaaaattccatttattttatggtcctaatgcaatccggattacgtaatccggaatgcaaaggggcatttttggaaattttaca 26319891  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 43387924 - 43387867
Alignment:
Q  131 taatgcaatccggattacgtaatccggaatgtaaaggggcatttttgtaaattttaca 188  Q
    ||||||||||||||||| |||||||||| || ||||||||||||||  ||||||||||    
T  43387924 taatgcaatccggattatgtaatccggactgcaaaggggcatttttagaaattttaca 43387867  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 36359155 - 36359080
Alignment:
Q  133 atgcaatccggattacgtaatccggaatgtaaaggggcatttttgtaaattttacaggacgtgcgagaagtcaaca 208  Q
    ||||||| |||||||||||||||||| |  ||| || |||||||| |||||||||||| || | ||||| ||||||    
T  36359155 atgcaattcggattacgtaatccggactagaaatggacatttttgaaaattttacagggcgcgtgagaaatcaaca 36359080  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 38641214 - 38641267
Alignment:
Q  137 aatccggattacgtaatccggaatgtaaaggggcatttttgtaaattttacagg 190  Q
    |||||||||||||||||||||| |  ||||| |||| |||| ||||||||||||    
T  38641214 aatccggattacgtaatccggactacaaaggagcatctttgaaaattttacagg 38641267  T

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Target: chr2 (Bit Score: 85; Significance: 4e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 33367519 - 33367727
Alignment:
Q  1 tcagttgtccgaatatttgctgcttagactttttaaaatgctgttctttgtaagctacgtcgggaaggacttgtctttgttaatagtgctgttttgttca 100  Q
    |||||||||| |||||||||||||||||||||||| |||  |||||||||||||||| || ||||| |||||||||||||||||||| ||||| ||||||    
T  33367519 tcagttgtcctaatatttgctgcttagactttttacaattatgttctttgtaagctaagttgggaatgacttgtctttgttaatagttctgttatgttca 33367618  T
Q  101 gaatctaaaatgcca-nnnnnnnnatggttttaatgcaatccggattacgtaatccggaatgtaaaggggcatttttgtaaattttacaggacgtgcgag 199  Q
    ||||||||||| |||         ||| |  | || |||| ||||||||||||| ||||||| ||| |  |||||||| ||||||||||||||| |||||    
T  33367619 gaatctaaaattccatttttttttatgatcctgatacaattcggattacgtaattcggaatgcaaatgaacatttttgaaaattttacaggacgcgcgag 33367718  T
Q  200 aagtcaaca 208  Q
    |||||||||    
T  33367719 aagtcaaca 33367727  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 25715856 - 25715913
Alignment:
Q  131 taatgcaatccggattacgtaatccggaatgtaaaggggcatttttgtaaattttaca 188  Q
    |||| |||||| |||||||||||  |||||| ||||||||||||||| ||||||||||    
T  25715856 taatacaatccagattacgtaatatggaatgcaaaggggcatttttggaaattttaca 25715913  T

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Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 36403718 - 36403640
Alignment:
Q  124 atggttttaatgcaatccggattacgtaatccggaatgtaaaggggcatttttgtaaattttacaggacgtgcgagaag 202  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||| | || ||||||||    
T  36403718 atggtgttaatgcaatccggattacgtaatccggactgcaaaggggcatttttgaaaattttacaaggcgcgcgagaag 36403640  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 41530976 - 41531047
Alignment:
Q  131 taatgcaatccggattacgtaatccggaatgtaaaggggcatttttgtaaattttacaggacgtgcgagaag 202  Q
    |||||||||||||||||||||||| ||| || |||| |||||||||  |||||||||| ||||| |||||||    
T  41530976 taatgcaatccggattacgtaatctggagtgcaaagaggcatttttaaaaattttacaagacgttcgagaag 41531047  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 16704664 - 16704565
Alignment:
Q  1 tcagttgtccgaatatttgctgcttagactttttaaaatgctgttctttgtaagctacgtcgggaaggacttgtctttgttaatagtgctgttttgttca 100  Q
    |||||||||| |||||||||| ||||| |||||   ||| || |||||||||||||| || | ||| ||||| ||||||||||| || ||||| ||||||    
T  16704664 tcagttgtcctaatatttgctacttaggcttttagcaattctattctttgtaagctaagttgtgaatgacttatctttgttaatcgttctgttatgttca 16704565  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 7970300 - 7970223
Alignment:
Q  131 taatgcaatccggattacgtaatccggaatgtaaaggggcatttttgtaaattttacaggacgtgcgagaagtcaaca 208  Q
    |||| |||| ||||||| |||||||| |||| ||| || |||||||| |||||||| ||| || ||||||||||||||    
T  7970300 taatacaattcggattaggtaatccgaaatgcaaaaggacatttttgaaaattttatagggcgcgcgagaagtcaaca 7970223  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 24628079 - 24628159
Alignment:
Q  130 ttaatgcaatccggattacgtaatccggaatgtaaaggggcatttttgtaaattttacaggacgtgcgagaagtcaacatgg 211  Q
    |||||||||||||||||||||||| | ||  | ||||||||| ||||| |||||||| ||| || |||||||  ||||||||    
T  24628079 ttaatgcaatccggattacgtaattcagacagcaaaggggca-ttttgaaaattttatagggcgcgcgagaatgcaacatgg 24628159  T

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Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 42660236 - 42660165
Alignment:
Q  131 taatgcaatccggattacgtaatccggaatgtaaaggggcatttttgtaaattttacaggacgtgcgagaag 202  Q
    |||||||||||||||||||||||||||| || ||||||| ||||||| |||||||||||| || ||||||||    
T  42660236 taatgcaatccggattacgtaatccggactgcaaaggggtatttttgaaaattttacagggcgcgcgagaag 42660165  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 50391700 - 50391632
Alignment:
Q  133 atgcaatccggattacgtaatccggaatgtaaaggggcatttttgtaaattttacaggacgtgcgagaa 201  Q
    |||||||||||| ||||||||||||| || ||| ||||||||||| |||||||||| |||| |||||||    
T  50391700 atgcaatccggaatacgtaatccggactgcaaatgggcatttttggaaattttacaagacgcgcgagaa 50391632  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 7817254 - 7817196
Alignment:
Q  142 ggattacgtaatccggaatgtaaaggggcatttttgtaaattttacaggacgtgcgaga 200  Q
    ||||| || |||||| | |||||||||||||||||| ||||||||||||| ||| ||||    
T  7817254 ggatttcgaaatccgaactgtaaaggggcatttttggaaattttacaggatgtgtgaga 7817196  T

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Target: scaffold0016 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 205667 - 205597
Alignment:
Q  131 taatgcaatccggattacgtaatccggaatgtaaaggggcatttttgtaaattttacaggacgtgcgagaag 202  Q
    |||||||||||||||||||||||||| | || ||| ||||||||||| |||||||||||| || ||||||||    
T  205667 taatgcaatccggattacgtaatccgaactgcaaa-gggcatttttgaaaattttacagggcgcgcgagaag 205597  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 48304573 - 48304648
Alignment:
Q  133 atgcaatccggattacgtaatccggaatgtaaaggggcatttttgtaaattttacaggacgtgcgagaagtcaaca 208  Q
    ||||||| |||||||||||||||||| || ||  ||||||||||| |||||||||||  || ||||||| ||||||    
T  48304573 atgcaattcggattacgtaatccggactgcaactgggcatttttgaaaattttacagagcgcgcgagaaatcaaca 48304648  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 8735720 - 8735777
Alignment:
Q  151 aatccggaatgtaaaggggcatttttgtaaattttacaggacgtgcgagaagtcaaca 208  Q
    |||||||| || ||||||||||||||| |||||||||||| || |||||||| |||||    
T  8735720 aatccggattgcaaaggggcatttttggaaattttacagggcgcgcgagaagacaaca 8735777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 9087961 - 9088018
Alignment:
Q  151 aatccggaatgtaaaggggcatttttgtaaattttacaggacgtgcgagaagtcaaca 208  Q
    |||||||| || ||||||||||||||| |||||||||||| || |||||||| |||||    
T  9087961 aatccggattgcaaaggggcatttttggaaattttacagggcgcgcgagaagacaaca 9088018  T

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