View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13775_low_12 (Length: 372)
Name: NF13775_low_12
Description: NF13775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13775_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 354
Target Start/End: Complemental strand, 37619541 - 37619203
Alignment:
| Q |
16 |
tcaatgtattttttacattctttgcactttaaatttcaagatagttcattcgcaggcacgttttatgctcaaatcattcacttttctgcatcaaaatagt |
115 |
Q |
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| T |
37619541 |
tcaatgtattttttagattctttgcactttaaatttcaagatagttcattcgcaggcacgttttatgctcaaatcattcacttttctgcatcaaaatagt |
37619442 |
T |
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| Q |
116 |
tcatcattcgtattctcaatattaaacattctaatcatttataattggtgatagattcctattccaacaataaaaaaccaacaagaaattgttaaccaaa |
215 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37619441 |
tcattattcgtattctcaatattaaacattctaatcatttataattggtgatagattcctattccaacaataaaaaaccaacaacaaattgttaaccaaa |
37619342 |
T |
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| Q |
216 |
acgaaaatcgatttttcttaaaagaaaccactcaaaatattttttgaacagtttttagattatggggagtatttaagggaggatggggtgcattaattta |
315 |
Q |
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| T |
37619341 |
acgaaaatcgatttttcttaaaagaaaccgctcaaaatattttttgaacagtttttagattatggggagtatttaagggaggatggggtgctttaattta |
37619242 |
T |
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| Q |
316 |
atcatgccgtttaatacatactatgggaaacttcacctt |
354 |
Q |
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|||||||||| ||||||||||||||||| |||||||||| |
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| T |
37619241 |
atcatgccgtgtaatacatactatgggatacttcacctt |
37619203 |
T |
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