View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13775_low_14 (Length: 343)
Name: NF13775_low_14
Description: NF13775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13775_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 325
Target Start/End: Original strand, 3101666 - 3101974
Alignment:
| Q |
17 |
caaaattggctgtacttcacagtcaaatctcgtgttctttgtttgcgtttatcgtatctgtttacttttgaaccagcgttattattctaacacatgctat |
116 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3101666 |
caaaattggctgtacttcacggtcaaatctcgtgttctttgtttgcgtttatcgtatctgtttacttttgaaccagcgttattattctaacacatgctat |
3101765 |
T |
|
| Q |
117 |
ctttgtggcgtagtaatgtttcgtttataatttctaccttgtattgcaggggaaagattaggagtatggctagctcttttcccaacagtttatttatcag |
216 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3101766 |
ctttgtggcgtagtaatgtttcatttataatttctaccttgtattgcaggggaaagattaggagtatggctagctcttttcccaacagtttatttatcag |
3101865 |
T |
|
| Q |
217 |
caggaactgcaacagctttgattcttgttggaggggagaccatgaaactgttctttcaaatagtttgtggtccaacatgtacctcaaatcctttaaccac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3101866 |
caggaactgcaacagctttgattcttgttggaggggagaccatgaaactgttctttcaaatagtttgtggtccaacatgtacctcaaatcctttaaccac |
3101965 |
T |
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| Q |
317 |
agtggagtg |
325 |
Q |
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||||||||| |
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| T |
3101966 |
agtggagtg |
3101974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 34655261 - 34655224
Alignment:
| Q |
51 |
ttctttgtttgcgtttatcgtatctgtttacttttgaa |
88 |
Q |
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| T |
34655261 |
ttctttgtttgcgtttttcgtatctgtttacttttgaa |
34655224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 40082495 - 40082539
Alignment:
| Q |
48 |
gtgttctttgtttgcgtttatcgtatctgtttacttttgaaccag |
92 |
Q |
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| T |
40082495 |
gtgttctttgtttccgtttatcatatctgttgtcttttgaaccag |
40082539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 11319482 - 11319551
Alignment:
| Q |
48 |
gtgttctttgtttgcgtttatcgtatctgtttacttttgaaccagcgttattattctaacacatgctatc |
117 |
Q |
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| T |
11319482 |
gtgttctttgcttgtgtttttcgtatctgtttacttttgaactagggttgctattctaacacatgttatc |
11319551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 34391991 - 34392062
Alignment:
| Q |
39 |
tcaaatctcgtgt--tctttgtttgcgtttatcgtatctgtttacttttgaaccagcgttattattctaaca |
108 |
Q |
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||||||||||||| ||||||||| ||||| ||||||||| ||||||||||||| | ||| || |||||||| |
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| T |
34391991 |
tcaaatctcgtgtcttctttgtttacgtttttcgtatctgcttacttttgaacctgagtttttgttctaaca |
34392062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 31550783 - 31550730
Alignment:
| Q |
39 |
tcaaatctcgtgttctttgtttgcgtttatcgtatctgtttacttttgaaccag |
92 |
Q |
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|||||||||||||||| ||| ||| ||| |||||| | |||||||||||||||| |
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| T |
31550783 |
tcaaatctcgtgttctctgtctgcatttttcgtatatatttacttttgaaccag |
31550730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 26037169 - 26037141
Alignment:
| Q |
38 |
gtcaaatctcgtgttctttgtttgcgttt |
66 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
26037169 |
gtcaaatctcgtgttctttgtttgcgttt |
26037141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 33717256 - 33717198
Alignment:
| Q |
48 |
gtgttctttgtttgcgtttatcgtatctgtttacttttgaaccagcgttattattctaa |
106 |
Q |
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||||||| ||||||| ||| |||||||||||||||||||||| || ||| || |||||| |
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| T |
33717256 |
gtgttctctgtttgcatttttcgtatctgtttacttttgaactagggttgttgttctaa |
33717198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 6263005 - 6263049
Alignment:
| Q |
48 |
gtgttctttgtttgcgtttatcgtatctgtttacttttgaaccag |
92 |
Q |
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||||||| ||||||||||| |||||||| ||| |||||||||||| |
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| T |
6263005 |
gtgttctctgtttgcgtttttcgtatctattttcttttgaaccag |
6263049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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