View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13775_low_19 (Length: 295)
Name: NF13775_low_19
Description: NF13775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13775_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 10 - 288
Target Start/End: Complemental strand, 4030929 - 4030651
Alignment:
| Q |
10 |
cctctttttgcttctatgctcgtctgtttcgctggaaagcgccggcgtgctactatcggtttccaatggattcttgttagctatatggtcagatgactta |
109 |
Q |
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| T |
4030929 |
cctctttttgcttctttgctcgtctttttcgctgtaaagcgccggcgtgctactatcagtttccaatggattcttgttagctatatggtcagatgactta |
4030830 |
T |
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| Q |
110 |
gtttctatttcatcttcctgtcaatatgtaatcataaatatttatatttcacattttcaccacattgtaattaaattttcagaagtaatattgtcatgta |
209 |
Q |
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| T |
4030829 |
gtttctatttcatcttcctgtcaatatgtaatcataaatatttatatttcacattttcaccacattgtaattaaattttcagaagtaatattgtcatgta |
4030730 |
T |
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| Q |
210 |
caaagacagtgaaatatatataattggagatatatgtaaaatttgtcaatgcaatcaatgtatagtaaactcaaatatt |
288 |
Q |
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| T |
4030729 |
caaagacagtgaaatatatataattggagatatatgtaaaatttgtcaatgcaatcaatgtatagtaaactcaaatatt |
4030651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 137 - 288
Target Start/End: Original strand, 13958407 - 13958558
Alignment:
| Q |
137 |
gtaatcataaatatttatatttcacattttcaccacattgtaattaaattttcagaagtaatattgtcatgtacaaagacagtgaaatatatataattgg |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13958407 |
gtaatcataaatatttatatttcacattttcaccacattgtaattaaattttcagaagtaatattgtcatgtacaaagacagtgaaatatatataattgg |
13958506 |
T |
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| Q |
237 |
agatatatgtaaaatttgtcaatgcaatcaatgtatagtaaactcaaatatt |
288 |
Q |
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| T |
13958507 |
agatatatgtaaaatttgtcaatgcaatcaatgtatagtaaactcgaatatt |
13958558 |
T |
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